PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107017001
Common NameGSBRNA2T00096275001, GSBRNA2T00107017001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 240aa    MW: 26493.8 Da    PI: 6.261
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107017001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.35e-1245105153
                          EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..E CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyr 53 
                          f+k+ltpsdv+k++rlv+pk++ae++          + ++e+++ l++ede g+ W+++    
  GSBRNA2T00107017001  45 FEKTLTPSDVGKLNRLVIPKQHAEKYfplnaisnnaDASTEKGMLLSFEDELGKCWRFRR--G 105
                          99********************************9988889*****************97..4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1739103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-1240104IPR015300DNA-binding pseudobarrel domain
CDDcd100178.79E-1144103No hitNo description
PfamPF023621.1E-945104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSVNHYSTDH HHHHNTLFWQ QLHTTDATET TTATWLNQDQ KESLFEKTLT PSDVGKLNRL  60
VIPKQHAEKY FPLNAISNNA DASTEKGMLL SFEDELGKCW RFRRGQGSSS AVANPTSYSS  120
SMVAASPYLQ VHASSNYSNP PSHSEYSHYG AAVATASETH SIPSSSAVGS SRTVRLFGVN  180
LECQRDEDDG DDSVAATTAT ECPDGYYGQN MYYYYTPHPH NMNIAFTGDT MKQLGDRRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-2241103460B3 domain-containing transcription factor NGA1
5os9_B6e-2241103460B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107017001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0067002e-46AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
GenBankCP0026882e-46CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022549405.11e-144B3 domain-containing protein At5g06250-like isoform X1
SwissprotQ9FNI31e-88Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A078ECJ91e-180A0A078ECJ9_BRANA; BnaCnng66590D protein
STRINGBra009171.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.24e-87B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]