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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00106950001 | ||||||||
Common Name | GSBRNA2T00106950001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 308aa MW: 35204.3 Da PI: 8.4222 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.5 | 8.5e-14 | 33 | 114 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++ + +L++a + rl g+l++++W+ev++++ + g ++ +qCk++++ l+k+yk++k+ + s +++fd+l+ GSBRNA2T00106950001 33 WTEDATATLLQAWGHRFVRLDFGNLRQNDWKEVADAVnssHCNGRPKTDTQCKSRIDTLKKKYKAEKAKLSP------SAWRFFDRLD 114 *************************************6666667788999*****************99986......57*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.1E-24 | 31 | 115 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
METTTPPPPP AKPQQPHSTV SHRQPTAGRE DWWTEDATAT LLQAWGHRFV RLDFGNLRQN 60 DWKEVADAVN SSHCNGRPKT DTQCKSRIDT LKKKYKAEKA KLSPSAWRFF DRLDVLIGPV 120 SKKPAEEVVK SEALKPYLSL TGTKYRESSL EDDDEEEEDG DWGFVARKHP RVEEGDLSEE 180 TACKELARTI VKLGEVYERI EGRKQKMMVE LEKQRMEVVK EIELQRMNML MEMQLELEKS 240 KNRKRGDGSG KSITPCLCVL SLISKSRCNL CENVMFCNQT SCRARGLQLG NNFVFKCLKQ 300 PKVHCCR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00106950001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189201 | 0.0 | AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013611633.1 | 1e-147 | PREDICTED: trihelix transcription factor ASIL2 | ||||
Refseq | XP_013737866.1 | 1e-147 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A0D3EHL1 | 0.0 | A0A0D3EHL1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EDP8 | 0.0 | A0A3P6EDP8_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g177060.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 2e-89 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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