PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00106395001
Common NameGSBRNA2T00106395001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 584aa    MW: 65474.7 Da    PI: 4.5814
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00106395001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.79.5e-49131392128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i  vd+ykv+P +Lp  + +k+++++w++F++r++ky++  r++r t++gyWkatgkd
  GSBRNA2T00106395001  13 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDVYKVDPTELPglSVLKSGDRQWFYFTPRNRKYPNAARSSRGTATGYWKATGKD 101
                          69***************************.89***************644888899********************************** PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + ++  +++ vglkktLvfy+grap+ge+tdWvmhey++
  GSBRNA2T00106395001 102 RIIVY-NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 139
                          ****9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.86912162IPR003441NAC domain
SuperFamilySSF1019411.83E-5512162IPR003441NAC domain
PfamPF023652.3E-2514138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MANSCLKGGR FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDVY KVDPTELPGL  60
SVLKSGDRQW FYFTPRNRKY PNAARSSRGT ATGYWKATGK DRIIVYNSRS VGLKKTLVFY  120
RGRAPNGERT DWVMHEYTMD EEELGRCKNA KEYYALYKLY KKSGAGPKNG EEYGAPFQEE  180
EWVDDDDDDD DDDREDADNV TVPDDHVVRY ENNPRVDDGV FCNPVDVRSD DFNKLLNEIP  240
YAPGLAPRQM NDLSGVMQVN NEEEIQSTLL NNSSGEFLAP SEVGMFLPNY QPNSMHSSYQ  300
SHAANSFDAT EVKSAFNASG MAPFLFEKED YIEMDDLLTP EQGAASVEKP AQFLNPGEYE  360
HFNDYDQLFH DVSMSFDLEP VFQGTSADLT SLSNFANDGR QHFLYQQQFQ NQTLESQANI  420
FMDPNPNVNQ FIDDMWFKDA QADLYDQTQS SSLAFASPSS GVMPESKNPV MSVNAQEQEC  480
QNGSETRTQF SSAMWALLES IPSTPASACE GPLNRTFVRM SSLSRIRFNA TSVTTSKVTA  540
AKKGIGNRGF LLLSVVGALC AIFWVFIIAT VGVQGRHRDL NLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-441413917140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:23926065}.
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00178DAPTransfer from AT1G34180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00106395001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638215.10.0PREDICTED: NAC domain-containing protein 16-like
SwissprotA4FVP60.0NAC16_ARATH; NAC domain-containing protein 16
TrEMBLA0A0D3CGH30.0A0A0D3CGH3_BRAOL; Uncharacterized protein
STRINGBo5g085440.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.10.0NAC domain containing protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]