PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00105203001
Common NameGSBRNA2T00105203001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 369aa    MW: 40405 Da    PI: 8.3285
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00105203001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.8e-06120143123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          ++C  Cg++F+   +L++Hi + H
  GSBRNA2T00105203001 120 FSCATCGEVFPKTNLLEHHIAVkH 143
                          89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
PROSITE profilePS501579.265120148IPR007087Zinc finger, C2H2
PROSITE patternPS000280122143IPR007087Zinc finger, C2H2
SuperFamilySSF563992.88E-12145367No hitNo description
Gene3DG3DSA:3.90.228.104.5E-5297367IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAAQKLGSLL RQHFFSLFFL FVGCFLFPKG SDCKHKKRKK KNLRTVSSGS GSGLSSPWSS  60
LKRFYLSTTR ISKPRSQTHP NGQLTTLTSA RSSHNSLVTL IQPDPETRNE SDSPLSDEIF  120
SCATCGEVFP KTNLLEHHIA VKHAVTELTD GESSTNIVKI IFKSGWPDLN NKAPEIHRIL  180
KIHNSPKILA RFEEYREFVK AKAARSCSGG GGRRRDDERC VADGNELLRF YCSTFMCDLG  240
QNGNSSLCGH QYCSVCGIIG SGFSPKLDGI ATLATGWRGH AAVPEEVEEE FGFMNVKRAM  300
LVCRVVAGRV GCDLIADDDV DKRDGGYDSL VGEGSGSKSG ALLRIDDEEL LVFNPRAVLP  360
CFVIVYTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13539KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00105203001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325770.0AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744269.10.0uncharacterized protein BNAC04G40700D
TrEMBLA0A0D3C2X50.0A0A0D3C2X5_BRAOL; Uncharacterized protein
STRINGBo4g169520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-148C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]