PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00105113001

Common Name

GSBRNA2T00105113001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 331aa MW: 37279.3 Da PI: 10.2614

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00105113001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.4	1.9e-30	264	322	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp ++++tYe eH h+k GSBRNA2T00105113001 264 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCVEDPAMLIVTYEAEHSHPK 322 99*********************9988**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	6.0E-16	219	260	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	8.4E-33	250	322	IPR003657	WRKY domain
PROSITE profile	PS50811	29.93	257	323	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-26	260	322	IPR003657	WRKY domain
SMART	SM00774	2.6E-36	262	322	IPR003657	WRKY domain
Pfam	PF03106	5.4E-26	264	321	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEEIEGTNRA AVESCHRVLN LLHQQDHGSS LVSETREAVS RFKRVGSLLS KSVGHARFRR 60 ANKKPLNHLS QAIFLDPCLL QTTQLPESSQ KLQSGFHELS LRPTDSLTLG TRSFSLKAPL 120 LQQNMFPEHQ HQQQQQQLHE RLQAHHLHQQ QQRHHQAEIM LRKCNGGISL SFDNSSCTPT 180 MSSTRSFVSS LSIDGSVANA EGRNSFHLVG DQSLLPHSKR KCLLKGDEHG SSSRCHCSKK 240 RKHRVRRSIR VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV 300 ERCVEDPAML IVTYEAEHSH PKLPSQAVTT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	250	325	2	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00105113001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013722571.1	0.0	probable WRKY transcription factor 21 isoform X1
Swissprot	O04336	1e-166	WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBL	A0A3P6C698	0.0	A0A3P6C698_BRAOL; Uncharacterized protein
STRING	Bra021652.1-P	0.0	(Brassica rapa)
STRING	Bo4g173290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-146	WRKY DNA-binding protein 21

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]