PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104909001
Common NameGSBRNA2T00104909001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 322aa    MW: 36086.1 Da    PI: 8.1788
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104909001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.3e-49141391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF Ptdeel+v+yL++k++g++++l + i+e+d+yk++ w Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk
  GSBRNA2T00104909001  14 LPPGFRFYPTDEELMVDYLCRKAAGHDFSL-QLIAEIDLYKFDAWVLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK 102
                          79***************************9.89***************8777899**********************************9 PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           + + +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl
  GSBRNA2T00104909001 103 VIST-EGRRVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
                          9999.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-6410162IPR003441NAC domain
PROSITE profilePS5100558.14414162IPR003441NAC domain
PfamPF023653.3E-2515139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGIQELDPLA QLSLPPGFRF YPTDEELMVD YLCRKAAGHD FSLQLIAEID LYKFDAWVLP  60
SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVISTEGRR VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQSSAQKQA YGNLMTSASE  180
YSNNGSSTST SSHQYDDVLE SLHEIDNRSL GYAAGSSHTI PHYNRRPGLT EQKTGFLDLA  240
REQSYNWTNF GGHNSVQELG RNLNVPSLRY GDGDDKTQQQ QAEGIPQFNN SGVLAHDQSF  300
SVDPVNGFGY SGQQPSGFGF M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-11811687174NAC domain-containing protein 19
3swm_B1e-11811687174NAC domain-containing protein 19
3swm_C1e-11811687174NAC domain-containing protein 19
3swm_D1e-11811687174NAC domain-containing protein 19
3swp_A1e-11811687174NAC domain-containing protein 19
3swp_B1e-11811687174NAC domain-containing protein 19
3swp_C1e-11811687174NAC domain-containing protein 19
3swp_D1e-11811687174NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:15319476}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104909001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by high salinity. Slightly up-regulated by drought, abscisic acid (ABA) and jasmonic acid. Not induced by cold treatment. {ECO:0000269|PubMed:15319476}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6701230.0KJ670123.1 Brassica napus NAC transcription factor 55-2 (NAC55-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302755.10.0NAC domain-containing protein 55-like
RefseqXP_009146239.10.0PREDICTED: NAC domain-containing protein 55
SwissprotQ9LDY80.0NAC55_ARATH; NAC domain-containing protein 55
TrEMBLA0A0C4MX450.0A0A0C4MX45_BRANA; NAC55-2.1 protein
TrEMBLA0A3P5ZIR60.0A0A3P5ZIR6_BRACM; Uncharacterized protein
TrEMBLM4EEM60.0M4EEM6_BRARP; Uncharacterized protein
STRINGBra027238.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14352795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.10.0NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng XY, et al.
    Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation.
    Cell Host Microbe, 2012. 11(6): p. 587-96
    [PMID:22704619]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Zhu X, et al.
    Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes.
    Plant J., 2015. 84(3): p. 597-610
    [PMID:26407000]
  6. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  7. Gimenez-Ibanez S, et al.
    JAZ2 controls stomata dynamics during bacterial invasion.
    New Phytol., 2017. 213(3): p. 1378-1392
    [PMID:28005270]
  8. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]
  9. Fu Y,Ma H,Chen S,Gu T,Gong J
    Control of proline accumulation under drought via a novel pathway comprising the histone methylase CAU1 and the transcription factor ANAC055.
    J. Exp. Bot., 2018. 69(3): p. 579-588
    [PMID:29253181]