PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104747001
Common NameGSBRNA2T00104747001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 510aa    MW: 57170.2 Da    PI: 4.6092
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104747001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.95.9e-781485092374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevs 88 
                          ++lL  cA a+++++ +++q++++ lselas+ gd+++Rla++ + AL+++++       + +p+s+ +   s+e+ +++k+   f+evs
  GSBRNA2T00104747001 148 EQLLNPCALAITARNSSRVQHYICVLSELASSCGDSNHRLASFGLCALKKHIST------SFVPSSTLT-FASAEVKMFQKTllkFYEVS 230
                          689**************************************************9......444444444.445555555555678***** PP

                 GRAS  89 PilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfA 169
                          P++ + + +aN+aIl+ +++e    + +Hi+D+++s+G+QWp+Ll+aL +Rpegpp ++RiT+v++ +++          +++++L  fA
  GSBRNA2T00104747001 231 PWFALPNNMANSAILQILSQEtrdkTDLHILDIGVSHGMQWPTLLEALCCRPEGPPlQVRITVVSDLTADipfsVGPPSYNYASQLIGFA 320
                          ******************9997766678************************99999*********99999998888999********** PP

                 GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfl 258
                          ++l+++++++v+        + + ++++p+E+ +V+ +++l++l     s+++er+e Lk+++sl+Pk vv++e + +  +s +F++ f+
  GSBRNA2T00104747001 321 RSLNINLQISVI-------DKSQLIDTSPHETFIVCAQFRLYQLK---NSITDERSEALKALRSLNPKGVVLCEYNGEGsSSVDFAADFS 400
                          **********96.......445678*******************8...77777789********************9997889******* PP

                 GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                          ++l+y ++++ds++ ++    +e+++ Er l++ e+++v++ +g+     +e +e W er+++aGF++ +++e+a + ak+llrk++ ++
  GSBRNA2T00104747001 401 RKLDYLWKFLDSTSYGF----KEENSEERNLMEGEATKVLMSSGDT----NEGKEIWYERMRKAGFSAEAFGEDAIDGAKSLLRKYDnNW 482
                          *************9997....8888889999999***********9....9************************************777 PP

                 GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                          + ++e+e+  + l Wk++++ ++S W+
  GSBRNA2T00104747001 483 EIKMEDEDTFAGLLWKGEEVSFCSLWK 509
                          777777777777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.562121488IPR005202Transcription factor GRAS
PfamPF035142.0E-75148509IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSLEETEPPS QTLDNVLGWF DDSISLTPLP GFTDSDLLNE FDWSQTWEWD HQTQAQDPGC  60
DFLHSYSQDL DAYIGCEATN LEVVTGVPVI DSDPPPVVQL PNDQTKKRNR DELNDPHVVK  120
RSARSKKKAD KSTEVSRKDS NKAERWAEQL LNPCALAITA RNSSRVQHYI CVLSELASSC  180
GDSNHRLASF GLCALKKHIS TSFVPSSTLT FASAEVKMFQ KTLLKFYEVS PWFALPNNMA  240
NSAILQILSQ ETRDKTDLHI LDIGVSHGMQ WPTLLEALCC RPEGPPLQVR ITVVSDLTAD  300
IPFSVGPPSY NYASQLIGFA RSLNINLQIS VIDKSQLIDT SPHETFIVCA QFRLYQLKNS  360
ITDERSEALK ALRSLNPKGV VLCEYNGEGS SSVDFAADFS RKLDYLWKFL DSTSYGFKEE  420
NSEERNLMEG EATKVLMSSG DTNEGKEIWY ERMRKAGFSA EAFGEDAIDG AKSLLRKYDN  480
NWEIKMEDED TFAGLLWKGE EVSFCSLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-3013950979473Protein SHORT-ROOT
5b3h_B4e-3013950925419Protein SHORT-ROOT
5b3h_E4e-3013950925419Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104747001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2425340.0JX242534.1 Brassica napus isolate BnaNSP1_A nodulation signaling pathway 1-like protein gene, complete cds.
GenBankJX2425360.0JX242536.1 Brassica juncea isolate BjNSP1 nodulation signaling pathway 1-like protein gene, complete cds.
GenBankJX2425410.0JX242541.1 Brassica ruvo isolate BruNSP1_A nodulation signaling pathway 1-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022575454.10.0scarecrow-like protein 29 isoform X1
RefseqXP_022575455.10.0scarecrow-like protein 29 isoform X2
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLA0A397ZK870.0A0A397ZK87_BRACM; Uncharacterized protein
TrEMBLJ7HA500.0J7HA50_BRANA; Nodulation signaling pathway 1-like protein
TrEMBLJ7HDC50.0J7HDC5_BRAJU; Nodulation signaling pathway 1-like protein
TrEMBLJ7HDC90.0J7HDC9_BRARR; Nodulation signaling pathway 1-like protein
STRINGBra027378.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]