PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00104607001 | ||||||||
Common Name | GSBRNA2T00104607001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 38579.3 Da PI: 7.0752 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.7 | 3.3e-51 | 10 | 141 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+deelv++yL++k+++k+l+++++ + e+d++ +ePw+Lp +k + kewyfFs rd+ky tg r+nrat sgyWkatgk GSBRNA2T00104607001 10 LPPGFRFHPSDEELVCHYLCNKIRAKSLHCNDAtdLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYCTGYRTNRATVSGYWKATGK 99 79*************************777665469999***********87788999******************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 d++v++ +++lvg++ktLvfy++rap+g kt+W+mhe+rle GSBRNA2T00104607001 100 DRTVIDPrTRQLVGMRKTLVFYRNRAPHGIKTTWIMHEFRLE 141 *****9967778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-58 | 8 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.813 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-27 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGLKDIGSTL PPGFRFHPSD EELVCHYLCN KIRAKSLHCN DATDLVEIDL HICEPWQLPD 60 VAKLNAKEWY FFSFRDRKYC TGYRTNRATV SGYWKATGKD RTVIDPRTRQ LVGMRKTLVF 120 YRNRAPHGIK TTWIMHEFRL ECPNMLPKEG WVLCRVFNKG RDLSLQDNNN DHLTRRFAVN 180 GAPDLNYAPN YNNQLHPLLS SSPSTTIDPL HHLDQWGQLM KQPSRTTDHP YHHHCKHQTT 240 ACGWEQMMGS MSSSSTHGHD HESLLNLLYA DNNNNINVTD DQYIQNYEKI LFPSDSTSLD 300 HDKICMGTSS DGGMVSNPHM ECGGLSFETD NPLSFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-47 | 10 | 159 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00104607001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738274 | 0.0 | KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603495.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
TrEMBL | A0A078FM93 | 0.0 | A0A078FM93_BRANA; BnaA08g13670D protein | ||||
STRING | Bo8g054390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3436 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-155 | NAC domain containing protein 74 |
Publications ? help Back to Top | |||
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