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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00104461001 | ||||||||
Common Name | GSBRNA2T00104461001, LOC106429478 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 155aa MW: 17086.1 Da PI: 8.8968 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.9 | 7.7e-16 | 81 | 127 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +++kGVr ++ +g+W AeI+dps r r +lg+f ta++Aa+a++ a+ GSBRNA2T00104461001 81 KKHKGVRKRP-SGKWSAEIWDPSA---RERRWLGTFPTAKMAARAYDDAAA 127 589*******.7*********954...4999****************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.11E-15 | 81 | 117 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-15 | 82 | 133 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.006 | 82 | 143 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-9 | 82 | 126 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-21 | 82 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-21 | 82 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-7 | 83 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-7 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MDYSEIDPSY DQKPPYLTRD QEHVIMVSAL RQVISNVGSD TTSSSNFEAL QPLDAGPCSL 60 CGITGCYGCA FPQHREISKE KKHKGVRKRP SGKWSAEIWD PSARERRWLG TFPTAKMAAR 120 AYDDAAAGLV RRKASRGGTR NGKEAYTKTT VEDD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00104461001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189587 | 1e-136 | AC189587.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012K23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013725679.1 | 1e-113 | ethylene-responsive transcription factor ERF120 | ||||
Swissprot | Q9SK67 | 1e-64 | EF120_ARATH; Ethylene-responsive transcription factor ERF120 | ||||
TrEMBL | A0A3P6FC61 | 1e-112 | A0A3P6FC61_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g051400.1 | 1e-111 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3472 | 15 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20350.1 | 5e-64 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106429478 |
Publications ? help Back to Top | |||
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