PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104323001
Common NameGSBRNA2T00104323001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 386aa    MW: 42602 Da    PI: 9.6208
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104323001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-0584106123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  GSBRNA2T00104323001  84 FVCEICNKGFQRDQNLQLHRRGH 106
                          89*******************88 PP
2zf-C2H212.90.00033161183123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +++
  GSBRNA2T00104323001 161 WKCEKCSKFYAVQSDWKAHTKVC 183
                          58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.5E-683106No hitNo description
Gene3DG3DSA:3.30.160.601.2E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94984106IPR007087Zinc finger, C2H2
PfamPF121715.8E-584106IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01784106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576675.5E-6156181No hitNo description
SMARTSM00355180161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDMFSSRNWS YRPSSLSAEA SASSGNTVSA IQDFNGLNNV ISSRLCTHTE TQKTKKRRGV  60
PGNPDPDAEV VALSPKTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQKNTKEQ  120
QKKKVYVCPD TKCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT  180
KVCGTREYRC DCGTLFSRKD SFITHRAFCD ALAEESARII SIPSTNLINL SPSFQDRHFM  240
LNKSSSSSLL FTSPPPYVNP APHPSTAAAL SATALLQKAT ALSSGPFGGG GQTRSVGHHR  300
PLTRYDQLVV DGLTSTWQNA DHLTRDFLGL TGHGVHVSVT PGDLLEYAGG VSLPMSTYLT  360
ESHDHESSSS FQKAYDLGFT GPHNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36157226372Zinc finger protein JACKDAW
5b3h_F3e-36157226372Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.98671e-128seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104323001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936720.0AB493672.1 Arabidopsis thaliana At4g02670 mRNA for hypothetical protein, partial cds, clone: RAAt4g02670.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619493.10.0PREDICTED: protein indeterminate-domain 12
RefseqXP_013674575.10.0protein indeterminate-domain 12
SwissprotO227590.0IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A0D3ASE20.0A0A0D3ASE2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DPP50.0A0A3P6DPP5_BRAOL; Uncharacterized protein
STRINGBo2g100660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.10.0indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]