PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104269001
Common NameGSBRNA2T00104269001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 428aa    MW: 48696.4 Da    PI: 5.2315
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104269001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.47.6e-4261353128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +G+rF+Pt eel+++yLk+k+ gk+  ++++i+ev+i+++ePw Lp  +k+++++  wyfFs+++ ++a+++ ++r+t sgyWkatg d+
  GSBRNA2T00104269001   6 VGYRFSPTGEELINHYLKNKILGKSWLVDHAISEVNICRYEPWFLPslSKLESKDLVWYFFSPKEYTSAKKNVTKRTTPSGYWKATGVDR 95 
                          7************************999889***************5447777888********************************** PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++  +g ++g+kktLv+y+gr p+g+ t Wv+hey++
  GSBRNA2T00104269001  96 KIKDRrgNGVEIGIKKTLVYYEGRVPNGVWTPWVLHEYHI 135
                          ****9777788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-464153IPR003441NAC domain
PROSITE profilePS5100546.0094153IPR003441NAC domain
PfamPF023657.8E-236135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MENNLVGYRF SPTGEELINH YLKNKILGKS WLVDHAISEV NICRYEPWFL PSLSKLESKD  60
LVWYFFSPKE YTSAKKNVTK RTTPSGYWKA TGVDRKIKDR RGNGVEIGIK KTLVYYEGRV  120
PNGVWTPWVL HEYHITSLPL NQRTYVICQV MYKGDDGDSL YGNNSNEPSS SMVSDSNPVK  180
FINTSPEVEQ QGQEDGMSMY DLLIPLNQQV DLSPYDVFNP NKSFTDNNYY PQTPYGDDYW  240
NGLLDYNGGN FEDVFRNQEL TMRENQSNHR PKRPLTGIIV DDSCSDSDAE SISATSYRGT  300
SSPGDSDGSV DEILSLRKGS SKDIITSINR NARESRFTRR TIPSKQEVKE GKSKANDDAS  360
MDKTLSPIMK TEKKGWFITE EAIQRNHKNA PYIYFMNMII GLILLVAVIG NIIWFYEASE  420
NEPADEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-26713518140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104269001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128520.10.0PREDICTED: NAC domain-containing protein 69-like isoform X1
RefseqXP_013719459.10.0NAC domain-containing protein 69-like
RefseqXP_018512449.10.0PREDICTED: NAC domain-containing protein 69-like isoform X2
SwissprotQ9M1261e-169NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A3P6ABB60.0A0A3P6ABB6_BRACM; Uncharacterized protein
STRINGBra008553.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-162NAC domain containing protein 69
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  3. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]