PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104268001
Common NameGSBRNA2T00104268001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 340aa    MW: 38553.6 Da    PI: 8.359
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104268001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.41.9e-3036121184
                          EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+kvltpsdv+k++rlv+pk++ae++   + + ++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L+ gD+v F++
  GSBRNA2T00104268001  36 FQKVLTPSDVGKLNRLVIPKQHAENYfplEDN-QTGTLLDFQDKNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLNNGDTVSFHR 121
                          99*********************999**7544.46789***********************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-3931132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-3033121IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-2834121No hitNo description
SMARTSM010194.2E-2336129IPR003340B3 DNA binding domain
PfamPF023621.4E-2736121IPR003340B3 DNA binding domain
PROSITE profilePS5086313.91636140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSTRASTHQE PAENGASGSD NNNNNNFNSA MREPMFQKVL TPSDVGKLNR LVIPKQHAEN  60
YFPLEDNQTG TLLDFQDKNG KMWRFRYSYW NSSQSYVMTK GWSRFVKEKK LNNGDTVSFH  120
RGYVPDDNEP EQRRNILFID WRNRPDTNLL HNINHHHYPI LGPPPYPTAS YYPVTEYSMP  180
HYGRFPSLYH NQFLGYGYGP YGKTVTGGRY YAGSPLDHHH RWNLGRSEPF FYDSCPVFPT  240
TRLTSSLAML PSSPPSQPPQ EGTAKKLRLF GFDVEESSSS GEARAEMGVA GHSSSSPVVI  300
RDNESSWRSP RGEMGGLSSS VVNLSDDEDY KRKGKSLEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-47301452114B3 domain-containing transcription factor NGA1
5os9_B3e-47301452114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104268001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013719435.10.0B3 domain-containing transcription factor NGA4-like
RefseqXP_013719444.10.0B3 domain-containing transcription factor NGA4-like
SwissprotO825951e-156NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A3P6AVI80.0A0A3P6AVI8_BRACM; Uncharacterized protein
STRINGBra008552.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-143B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]