PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 515aa MW: 58553.8 Da PI: 6.9164

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00103658001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.9	4.6e-10	354	391	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + GSBRNA2T00103658001 354 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 391 665559******************************88 PP
2	BELL	126.6	9e-41	217	288	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++ +eVdkrY+qy++q+++v+ssFe+vaglg+akpYts+Al++iSrhFrcL+dai+eqi GSBRNA2T00103658001 217 ERQELQSKKNKLLTMADEVDKRYNQYYHQMEAVASSFEMVAGLGAAKPYTSVALNRISRHFRCLRDAIKEQI 288 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.9E-54	146	286	IPR006563	POX domain
Pfam	PF07526	1.2E-49	152	284	IPR006563	POX domain
PROSITE profile	PS50071	12.503	332	395	IPR001356	Homeobox domain
SMART	SM00389	6.5E-10	335	399	IPR001356	Homeobox domain
CDD	cd00086	1.69E-11	335	396	No hit	No description
SuperFamily	SSF46689	7.7E-18	336	403	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	338	401	IPR009057	Homeodomain-like
Pfam	PF05920	6.3E-18	352	391	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MAVYYPTSVG MQPLYQESIY LNEQQQASSS SAASFSGGGG GLDIPNSDGG VRNEMVFIPP 60 TNDVVVTGLN ESSSNDLSLQ GGGLSLSLGN QIQYHYQNLS NQLNYINDEN GKSLSHHHHQ 120 HQAEQVPSTG YSIGVGYYNN YRYETSGFVN SVLRSRYLKP TQQLLDEVVS VRKDMKQGES 180 NKKTKNNNND KGQDFTNGSS DNNTENKKLH EELSPQERQE LQSKKNKLLT MADEVDKRYN 240 QYYHQMEAVA SSFEMVAGLG AAKPYTSVAL NRISRHFRCL RDAIKEQIQV IRGKLGEKET 300 SEEQGERIPR LRYLDQRLRQ QRALHQQLGM VRPSWRPQRG LPENSVSILR AWLFEHFLHP 360 YPKESEKIML AKQTGLSKNQ VANWFINARV RLWKPMIEEM YKEEFGDASE LLSNSNRDKN 420 KMQETSQLKH EDSSSSQQHL QGNNNNNIAY TSAVEENLVF TDPIPDRVTT TGDYHSLMNY 480 HQGFGVDDYN RYIGLGNQQD GRFSNPHQLH DFVV*

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MAVYYPTSVG MQPLYQESIY LNEQQQASSS SAASFSGGGG GLDIPNSDGG VRNEMVFIPP  60
TNDVVVTGLN ESSSNDLSLQ GGGLSLSLGN QIQYHYQNLS NQLNYINDEN GKSLSHHHHQ  120
HQAEQVPSTG YSIGVGYYNN YRYETSGFVN SVLRSRYLKP TQQLLDEVVS VRKDMKQGES  180
NKKTKNNNND KGQDFTNGSS DNNTENKKLH EELSPQERQE LQSKKNKLLT MADEVDKRYN  240
QYYHQMEAVA SSFEMVAGLG AAKPYTSVAL NRISRHFRCL RDAIKEQIQV IRGKLGEKET  300
SEEQGERIPR LRYLDQRLRQ QRALHQQLGM VRPSWRPQRG LPENSVSILR AWLFEHFLHP  360
YPKESEKIML AKQTGLSKNQ VANWFINARV RLWKPMIEEM YKEEFGDASE LLSNSNRDKN  420
KMQETSQLKH EDSSSSQQHL QGNNNNNIAY TSAVEENLVF TDPIPDRVTT TGDYHSLMNY  480
HQGFGVDDYN RYIGLGNQQD GRFSNPHQLH DFVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	341	399	5	63	Homeobox protein Meis2
3k2a_B	5e-16	341	399	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.6640	1e-171	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00103658001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189493	0.0	AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592560.1	0.0	PREDICTED: BEL1-like homeodomain protein 3
Swissprot	Q9FWS9	0.0	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	A0A0D3D0W5	0.0	A0A0D3D0W5_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6H380	0.0	A0A3P6H380_BRAOL; Uncharacterized protein
STRING	Bo6g119600.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3820	19	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	0.0	BEL1-like homeodomain 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]