PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00103658001 | ||||||||
Common Name | GSBRNA2T00103658001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 515aa MW: 58553.8 Da PI: 6.9164 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.9 | 4.6e-10 | 354 | 391 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + GSBRNA2T00103658001 354 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 391 665559******************************88 PP | |||||||
2 | BELL | 126.6 | 9e-41 | 217 | 288 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++ +eVdkrY+qy++q+++v+ssFe+vaglg+akpYts+Al++iSrhFrcL+dai+eqi GSBRNA2T00103658001 217 ERQELQSKKNKLLTMADEVDKRYNQYYHQMEAVASSFEMVAGLGAAKPYTSVALNRISRHFRCLRDAIKEQI 288 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.9E-54 | 146 | 286 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-49 | 152 | 284 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.503 | 332 | 395 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-10 | 335 | 399 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.69E-11 | 335 | 396 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-18 | 336 | 403 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 338 | 401 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.3E-18 | 352 | 391 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MAVYYPTSVG MQPLYQESIY LNEQQQASSS SAASFSGGGG GLDIPNSDGG VRNEMVFIPP 60 TNDVVVTGLN ESSSNDLSLQ GGGLSLSLGN QIQYHYQNLS NQLNYINDEN GKSLSHHHHQ 120 HQAEQVPSTG YSIGVGYYNN YRYETSGFVN SVLRSRYLKP TQQLLDEVVS VRKDMKQGES 180 NKKTKNNNND KGQDFTNGSS DNNTENKKLH EELSPQERQE LQSKKNKLLT MADEVDKRYN 240 QYYHQMEAVA SSFEMVAGLG AAKPYTSVAL NRISRHFRCL RDAIKEQIQV IRGKLGEKET 300 SEEQGERIPR LRYLDQRLRQ QRALHQQLGM VRPSWRPQRG LPENSVSILR AWLFEHFLHP 360 YPKESEKIML AKQTGLSKNQ VANWFINARV RLWKPMIEEM YKEEFGDASE LLSNSNRDKN 420 KMQETSQLKH EDSSSSQQHL QGNNNNNIAY TSAVEENLVF TDPIPDRVTT TGDYHSLMNY 480 HQGFGVDDYN RYIGLGNQQD GRFSNPHQLH DFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-16 | 341 | 399 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-16 | 341 | 399 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6640 | 1e-171 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00103658001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189493 | 0.0 | AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592560.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 3 | ||||
Swissprot | Q9FWS9 | 0.0 | BLH3_ARATH; BEL1-like homeodomain protein 3 | ||||
TrEMBL | A0A0D3D0W5 | 0.0 | A0A0D3D0W5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6H380 | 0.0 | A0A3P6H380_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g119600.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3820 | 19 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75410.2 | 0.0 | BEL1-like homeodomain 3 |
Publications ? help Back to Top | |||
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