PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00103597001 | ||||||||
Common Name | GSBRNA2T00103597001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 22234.5 Da PI: 4.1094 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 22 | 72 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGVr +k +g+Wv+eIr p++ r r++lg+f+t+e+Aa+a +aa +l+g GSBRNA2T00103597001 22 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSFDTPEKAARAFDAAQFCLRG 72 89*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.79E-29 | 22 | 82 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-20 | 22 | 81 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-12 | 22 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-28 | 23 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-28 | 23 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.575 | 23 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-10 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-10 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MVKKAMKEEE EEAEMRNSSM QSKYKGVRKR KWGKWVSEIR LPNSRERIWL GSFDTPEKAA 60 RAFDAAQFCL RGCQSGFNFP DNPPSISGGR SLSPPEIREA AARYANAQDD GILITTGEEE 120 SVLSETRPES PSTTSVSEAD TSLDCDLSFL DTLPNDFGMF SVFDDFSDGF SGDQFTEVLP 180 VEDYGDVIFD ESLFLWDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 21 | 88 | 12 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 30 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00103597001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590474.1 | 1e-131 | PREDICTED: ethylene-responsive transcription factor ERF018 | ||||
Swissprot | Q9S7L5 | 4e-88 | ERF18_ARATH; Ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A0D3D0R7 | 1e-130 | A0A0D3D0R7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GE72 | 1e-130 | A0A3P6GE72_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g119120.1 | 1e-130 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1614 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 1e-69 | ERF family protein |
Publications ? help Back to Top | |||
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