PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00103373001 | ||||||||
Common Name | GSBRNA2T00103373001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 241aa MW: 27265.3 Da PI: 10.1882 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.1 | 5.2e-32 | 35 | 90 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 e ++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF GSBRNA2T00103373001 35 ESVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 90 789**************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.6E-37 | 32 | 93 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.759 | 33 | 93 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.7E-23 | 36 | 58 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.8E-26 | 36 | 90 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 38 | 58 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 6.7E-23 | 67 | 90 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MRFQVSSSIL QTCNPQMVGM VPGRVALPVE ITETESVFVN AKQYHAIMRR RQQRAKLEAQ 60 NKLIKARKPY LHESRHVHAL KRPRGSGGRF LNTKKLLQES QQAAAKEQER DKSVQQAMRQ 120 TCLDSKLICC STTKTVVAQP LLALTSHLFP KVLISSEKLN SSFRVSQQLR LTELCLFMVS 180 PMTCMEVGTC TISLSISETL DLWCCFMFPT KRGSHPWLLL LLVLLLAVTC YFSISLYLLF 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-20 | 35 | 95 | 3 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.13309 | 1e-174 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00103373001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189507 | 0.0 | AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence. | |||
GenBank | AC189607 | 0.0 | AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3D075 | 1e-134 | A0A0D3D075_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g116210.1 | 1e-134 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3349 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 3e-53 | nuclear factor Y, subunit A3 |
Publications ? help Back to Top | |||
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