PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103365001
Common NameGSBRNA2T00103365001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 299aa    MW: 32737 Da    PI: 7.3447
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103365001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13e-11556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT +E+e l  +++++G+g Wk I r         +R+  ++k++w+++
  GSBRNA2T00103365001  5 KLKWTGDEEEALRAGIEKHGPGKWKNILRDPEfadqlSNRSNIDLKDKWRNL 56
                         689**********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.335161IPR017930Myb domain
SuperFamilySSF466898.22E-16365IPR009057Homeodomain-like
SMARTSM007173.0E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-13457IPR009057Homeodomain-like
PfamPF002494.2E-7556IPR001005SANT/Myb domain
CDDcd116607.58E-21757No hitNo description
SuperFamilySSF467856.53E-13125213IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.3E-17126191IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.6E-11127193IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.022128202IPR005818Linker histone H1/H5, domain H15
PfamPF005381.2E-8130190IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGNQKLKWTG DEEEALRAGI EKHGPGKWKN ILRDPEFADQ LSNRSNIDLK DKWRNLCVAP  60
ATQCSNDKSR TRKVKEEGVT LASLSPTAAA ATPPPYANSS SSSPATSLPR SASSDFSVDN  120
NFVVDNKNAP RYDAMIFEAI SELADPNGSD VGSIFSFIEP RHEVPPTFRR VLSSRLRRLA  180
AQGKLSKVSN SKPLLNFYKL PDGSETTPAP TPKPKETNIK PRQSYINQPP SVSQEMIDEA  240
AITAACKVVE AENKINVAKA AVEELEKTTK LADETELMLE LAKEMHKQCC RDEVVVLA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.147480.0flower| seed
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103365001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895071e-127AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896071e-127AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105940.10.0PREDICTED: telomere repeat-binding factor 4 isoform X1
RefseqXP_013649580.10.0telomere repeat-binding factor 4-like isoform X1
SwissprotF4IEY41e-114TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A397Z0R51e-179A0A397Z0R5_BRACM; Uncharacterized protein
STRINGBo6g116150.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.13e-96MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]