PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103166001
Common NameGSBRNA2T00103166001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 239aa    MW: 26999.7 Da    PI: 5.6737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103166001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-0763116154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +++  n++Er RR r+  ++ +L +llP +s+ ++kK    +i  ++v YI +L
  GSBRNA2T00103166001  63 KKQERNANERLRRMRLHASYLTLGTLLPDQSSSSKKKWCAPSIMDRVVTYIPKL 116
                          67889************************88889999**************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-957128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.95662116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-762121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-463116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSDHQILEPS LLDDLFHIPA ETIVEEFREK DDTFRAQSES KGKEVVIVLH DENVHGSSSG  60
AAKKQERNAN ERLRRMRLHA SYLTLGTLLP DQSSSSKKKW CAPSIMDRVV TYIPKLLNEV  120
EELTIRKKKL AEAIESEKSQ RLERQDPQTR AISVLELGES GDEVVVQISM KKEKEDEFSN  180
LLNVMEMQGS SILSASTSLV CRHQRVVCYN LHVKMDEKPC EGDDYITVLK NNITSSLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103166001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591325.11e-171PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106299862
SwissprotF4I8F91e-96BH160_ARATH; Transcription factor bHLH160
TrEMBLA0A3P6HDU71e-164A0A3P6HDU7_BRAOL; Uncharacterized protein
STRINGBo01532s010.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105582234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.16e-99bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yan J, et al.
    Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.
    Plant Cell, 2017. 29(12): p. 3012-3029
    [PMID:29114014]