PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00102884001 | ||||||||
Common Name | GSBRNA2T00102884001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 1021aa MW: 112465 Da PI: 6.9929 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F GSBRNA2T00102884001 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLIAGDSVLFV 213 99*****************************954.4444.48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ GSBRNA2T00102884001 214 --RDEKSQLTLGIRRA 227 ..45677789999997 PP | |||||||
2 | Auxin_resp | 119.4 | 2.9e-39 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F++++nPras+seFvv+++k++kal+ +vs+GmRf+m+feted+ rr++Gtv+gvsdldpvrW++S+Wr+L+ GSBRNA2T00102884001 252 AAHANANNSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGVSDLDPVRWKGSQWRNLQ 334 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.79E-44 | 116 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-41 | 120 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.16E-22 | 125 | 226 | No hit | No description |
SMART | SM01019 | 1.2E-24 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.576 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-22 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.2E-34 | 252 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.1E-9 | 890 | 978 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.855 | 892 | 985 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.67E-8 | 906 | 970 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1021 aa Download sequence Send to blast |
MKAPSNGFHP SSAEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ 60 TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLIAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS 240 SDSMHIGILA AAAHANANNS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF 300 ETEDCGVRRY MGTVTGVSDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS VWEIEPVITP 360 FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM 420 SMQQNNTLSA GAAATTQLPS AYNLPKNFAL NDPSKLLNFQ SPNLSPVNSQ FNKPNMVSSH 480 ISQQMQVQPA MVKSQQQVQI SHQQLQQGVY NAGSVNNGVS VVSCQNQSTG FSQSQLQQQS 540 MLSNGSAKMN HQSIVGNKSS SQMTSQELQF QQQMELHNSS QLLRTQQEQS SMHSLQQTPQ 600 QLQMQQQSST PSPSQQLQLQ LLQKLQQQQQ STPPVSSSLQ PQLSAALQQT QSHQLQQLLS 660 SQNQQPFSAP TFMQPPQVQV SHHQQQGHMN NKPLVAAGGS HSGHTDGEVP TCSTSPSANN 720 TRHDNVSPTN FLSRSQQQGQ AASVPAPDPV QSRNNQGMVN LRSAADQINV STAGTTYCPD 780 AVGTAQQQQT LPLPSFGYCQ QRNNLACAGN IEAVTTPDAL YSQKEFQNLV PNYANAPRDI 840 ETELSSAAIS SQSFGIPSIP FKSGGSNEIG GVNHSGIMNG GGLWPNQAQR MRTYTKVQKR 900 GSVGRSIDVT RYSGYEELRN DLARMFGIEG QLEDPRPSDW KLVYTDHEND ILLVGDDPWE 960 EFVNCVQNIK ILSSVEVQQM SLDGDLAAIP ATTQVCSETD SGNAWKVHYE DTSAAASFNR 1020 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-172 | 15 | 355 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00102884001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979483 | 0.0 | JN979483.1 Brassica rapa subsp. pekinensis auxin response factor 19-1 (ARF19-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013657228.1 | 0.0 | auxin response factor 19-like | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | A0A3P6CHV6 | 0.0 | A0A3P6CHV6_BRACM; Auxin response factor | ||||
STRING | Bra016517.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |