PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102589001
Common NameGSBRNA2T00102589001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 583aa    MW: 64494.9 Da    PI: 5.8885
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102589001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-08488536348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E   lv++v ++G g W+ I +       +Rt  ++k++w+++l
  GSBRNA2T00102589001 488 AWTLTEVTTLVEGVSKYGAGKWSEIKKFSFsshSHRTSVDLKDKWRNLL 536
                          7**************************9999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.248481540IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-13483542IPR009057Homeodomain-like
SMARTSM007171.0E-8485538IPR001005SANT/Myb domain
CDDcd116602.45E-21487537No hitNo description
SuperFamilySSF466892.3E-16487546IPR009057Homeodomain-like
PfamPF139218.0E-7489544No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MGTVVGTVED RREMFDVSAQ TRITPFSSAN QIGNPVAYKL VRVAGDGRLV PATDEEILEV  60
NEIDVSDACQ SLGYLPAEGS PSRLSQLEET SEGLLRSDKV EPSTDQYSEE FLQKVEQDER  120
LVMVSTPPDA NIQCCNENNM FDEDQVHHEP LPFSSDVQNG CDVNQTNTVE PSCPKETALP  180
ASAASQKPDF ALVRGEICLN DLPIKALQET FRATFGRETT VKDKTWLKRR ITMGLTKSFD  240
VPTTNLTIKD NKLVGIKDKS NDVSDDVRAT NVKEAPSSSA YHVNGHSNAS GRSLGVNHYW  300
ATEDFSSEER AAKRVRKPTR RYIEELETDD KSVVTSKDQR LSEKSEVRSM SVSLGKRVTV  360
TRVVPLGGSE VEVPYVSHVR RSRPRENFMA LMECHTNCLE AKGSARESNL LNSEVVSPGS  420
VVKSASGPIQ KELATSHNNT NEEYIPAEAD QDMEPDHVDS SGNSSDEYNN TGAPMMQGGG  480
LRRKHHRAWT LTEVTTLVEG VSKYGAGKWS EIKKFSFSSH SHRTSVDLKD KWRNLLRASF  540
AQSPSNTMGS FKKHGSMHIP VEILLQVREL AEKQSLVPPN HR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102589001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895070.0AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896070.0AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105926.10.0PREDICTED: uncharacterized protein LOC103831770 isoform X3
TrEMBLA0A3P6BG970.0A0A3P6BG97_BRACM; Uncharacterized protein
STRINGBra016044.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.10.0TRF-like 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]