PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102145001
Common NameGSBRNA2T00102145001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 1259aa    MW: 139563 Da    PI: 8.0169
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102145001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1156.46e-493104303117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK.....vggvevlycyYa 86 
                          +e ++rwlk+ e++ iL n+e+++lt +++++p+sgs++Lyn++++++frkDG++wk+kkdg+++ E+he+LK     vg+ve+l+cyYa
  GSBRNA2T00102145001 310 REaHTRWLKPPEVHFILLNHERYRLTDKPPHKPSSGSVLLYNKRVLKFFRKDGHQWKRKKDGRAIAEAHERLKasyilVGNVEALQCYYA 399
                          55589********************************************************************55555567********* PP

                 CG-1  87 hseenptfqrrcywlLeeelekivlvhylev 117
                          h+e++p+fqrr+yw+L+ e+e+i lvhy++v
  GSBRNA2T00102145001 400 HGEHEPSFQRRIYWILDPEYEHIALVHYRDV 430
                          *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902099.42E-71753IPR001876Zinc finger, RanBP2-type
Gene3DG3DSA:4.10.1060.101.7E-111953IPR001876Zinc finger, RanBP2-type
PfamPF006412.6E-62244IPR001876Zinc finger, RanBP2-type
SMARTSM005470.0452450IPR001876Zinc finger, RanBP2-type
SuperFamilySSF902093.92E-8190228IPR001876Zinc finger, RanBP2-type
Gene3DG3DSA:4.10.1060.108.9E-12193228IPR001876Zinc finger, RanBP2-type
SMARTSM005470.02199225IPR001876Zinc finger, RanBP2-type
Gene3DG3DSA:4.10.1060.109.1E-10240277IPR001876Zinc finger, RanBP2-type
SuperFamilySSF902091.88E-5240278IPR001876Zinc finger, RanBP2-type
PfamPF006413.6E-6246277IPR001876Zinc finger, RanBP2-type
SMARTSM005475.7E-5248274IPR001876Zinc finger, RanBP2-type
PROSITE profilePS5143769.299305436IPR005559CG-1 DNA-binding domain
SMARTSM010768.8E-67308431IPR005559CG-1 DNA-binding domain
PfamPF038594.9E-41311430IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.18E-17724808IPR014756Immunoglobulin E-set
PfamPF018334.4E-9724807IPR002909IPT domain
CDDcd001021.48E-6724809No hitNo description
Gene3DG3DSA:2.60.40.103.1E-8724811IPR013783Immunoglobulin-like fold
Gene3DG3DSA:1.25.40.205.9E-15896993IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.512898990IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.13E-15900993IPR020683Ankyrin repeat-containing domain
CDDcd002045.61E-13903990No hitNo description
PfamPF127964.1E-7919991IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0021931960IPR002110Ankyrin repeat
PROSITE profilePS5008810.766931963IPR002110Ankyrin repeat
SMARTSM000152110421064IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.65710431071IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.54E-710441150IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.7810981120IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.23610991128IPR000048IQ motif, EF-hand binding site
PfamPF006120.01611001119IPR000048IQ motif, EF-hand binding site
SMARTSM000153.1E-411211143IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.99311221146IPR000048IQ motif, EF-hand binding site
PfamPF006121.1E-411231143IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1259 aa     Download sequence    Send to blast
MSQVDNRNSS AAKRARTDGG RREDDWTCPS CGNVNFSFRT TCNMRNCTQS RPADHNGKSA  60
PRPMQPHQSF SSPGRYLGSG APSPVLMGGS PYGSSLFNGS SMSPYDVPFS GGSPYHFNYN  120
SRFPPAGPHY RPFHMSGPPS PYHGRSMMGS GMYGMALPPM DRFGFGMAMS PAAAAAMMPR  180
PGGYFADEKS QKRDLSREND WACPNCGNVN FSFRTMCNMR KCNTPKPGPQ LQQCGSSDKT  240
SNQKAPEGSW KCDSCGNINY PFRSKCNRQN CGADKPGNQS NESPSNAPED NDKAKSFFFF  300
EEYDVSTLYR EAHTRWLKPP EVHFILLNHE RYRLTDKPPH KPSSGSVLLY NKRVLKFFRK  360
DGHQWKRKKD GRAIAEAHER LKASYILVGN VEALQCYYAH GEHEPSFQRR IYWILDPEYE  420
HIALVHYRDV SDGKEVKQQT GGTVLHFSPN PSTLGSIGTQ NASYSHCIGV SSEIHQQQHS  480
SASAGNVEVN SDTSKGSGSL SYEFETREAL KRLEEQLSLG DDDNVVQNES LDGLQFLGFS  540
KTDIDHHLVP PATVHQRPES SSKLGRCYGG YVGGAQCNRA ENNRLERCYG GYIGAEYHSN  600
NLMLVKNDSG RPNLYIIGSG DQKAESWKDV LEACEASIAL NSEGSTPSSA KGLLTRMQED  660
SNLSYSNQAD QATLLLPQEL GPSFELPTRY SELGALANNA NNSRMELPFE QVMNQTVAHK  720
QKFTIQDISP EWGYANETTK VMIIGSFLCD PKESTWSCMF GSTEVPFEII KEGVIRCQAP  780
PCGPGKVNLC IASGDGLSCS QIKEFEYRDK PDDTSCPWSS RDELLLLVRL VQTLVSDSKS  840
NLEPWSHILE TVLDGTATSS STVDWLLQEL VKEKLDAWLS SRPRQVEDQT SCCSLSKQEQ  900
GIIHMVAGLG FEWALHPILS RGVSVDFRDI NGWSALHWAA RFGSEKMVAA LIASGASAGA  960
VTDPTAQDPA GKTAASIAAS NGHKGLAGYL SEVALTNHLS SLTLEETEKS KETAQLQAEV  1020
TLNSISERSP HSLKDSLAAV RNAAQAVARI QAAFRAHSFR KRQQREAAMA AYFQEYGIYA  1080
DIKGISAISK VAPGNVKNYH SAALSIQKNY RRYKRRKEFL SLRKKVVKIQ AHVRGYQIRK  1140
HYKVICWAVG ILDKVVLRWR RKGAGLRGFR QDVEDSEEED ILKVFRKQKV DVAVKEAFSR  1200
VLSMAKSPEA RQQYHRVLKR YCQTKAELGK TETLGAGGDE DEDLFDLADM EDDSLFAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111101117RRYKRRKE
211111124RYKRRKEFLSLRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.153510.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102145001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105274.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
RefseqXP_013649217.10.0calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A3P6BYX00.0A0A3P6BYX0_BRACM; Uncharacterized protein (Fragment)
STRINGBra004217.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]