PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00101482001

Common Name

GSBRNA2T00101482001, LOC106388364

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 354aa MW: 39341.8 Da PI: 9.661

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00101482001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.7	1.2e-21	54	145	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +W+ +e+ aLi+++r+++++l+rg+lk+++Weev++++ +++++qC++k+e+l+kry+ + +++++ ++ +s++++++++ GSBRNA2T00101482001 54 CWSLEETIALIDGYRDKWHALNRGNLKANHWEEVAEAVagncPGVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFVSSWVHYKRM 143 7***********************************88544444599*********************977999******** PP trihelix 86 ea 87 ea GSBRNA2T00101482001 144 EA 145 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0031	51	117	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-19	53	146	No hit	No description
PROSITE profile	PS50090	6.214	55	115	IPR017877	Myb-like domain
SMART	SM00595	7.3E-14	62	151	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSDPDSPLEQ DPIQDPLPVR NQSPPPQPDD SVTDLKIAST PAVAKNSRRL PPPCWSLEET 60 IALIDGYRDK WHALNRGNLK ANHWEEVAEA VAGNCPGVTP KKTAVQCRHK MEKLRKRYRT 120 EIQRARSVPV ARFVSSWVHY KRMEAMEDRP ESKPGGGDEE RAELYGGGGS VGRSTPRFFN 180 RNGTAGGSSS SGGIRIRIPT GVSIAQPGPR FPGKIDPKYT ASASSRLGRV GGGTSYGARG 240 VRIQEGEERA GKRGREMMMM MTMTTEEEEE ESDDPMVEIA SAIKLLGDTL LRTEEKKMEM 300 TREIEAMRME MEMKRTKMIL ESQQRIVEAF AKSMSENLEE KKKKARRVSS LPP*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSDPDSPLEQ DPIQDPLPVR NQSPPPQPDD SVTDLKIAST PAVAKNSRRL PPPCWSLEET  60
IALIDGYRDK WHALNRGNLK ANHWEEVAEA VAGNCPGVTP KKTAVQCRHK MEKLRKRYRT  120
EIQRARSVPV ARFVSSWVHY KRMEAMEDRP ESKPGGGDEE RAELYGGGGS VGRSTPRFFN  180
RNGTAGGSSS SGGIRIRIPT GVSIAQPGPR FPGKIDPKYT ASASSRLGRV GGGTSYGARG  240
VRIQEGEERA GKRGREMMMM MTMTTEEEEE ESDDPMVEIA SAIKLLGDTL LRTEEKKMEM  300
TREIEAMRME MEMKRTKMIL ESQQRIVEAF AKSMSENLEE KKKKARRVSS LPP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00101482001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189399	0.0	AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013683867.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A0D3B6R1	0.0	A0A0D3B6R1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AD99	0.0	A0A3P6AD99_BRAOL; Uncharacterized protein
STRING	Bo3g037360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-128	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	106388364

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]