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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00101318001 | ||||||||
Common Name | GSBRNA2T00101318001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 290aa MW: 32744.7 Da PI: 7.7552 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.4 | 5.9e-21 | 23 | 68 | 6 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +s + +++kR+ +++KKAeELS+LC++ev+vi ++s+g+l+++++ GSBRNA2T00101318001 23 SSLKAASLAKRQVTVFKKAEELSILCGVEVCVICYGSDGELRTWPK 68 677889**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.0E-4 | 4 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-15 | 24 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.676 | 26 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.01E-16 | 26 | 92 | No hit | No description |
Pfam | PF00319 | 1.6E-13 | 28 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-5 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-5 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MSSSLSKTTK VSQFRPTLFQ KASSLKAASL AKRQVTVFKK AEELSILCGV EVCVICYGSD 60 GELRTWPKDR EKVKDMALRY SQLSELIQSL ERKETIMQDR LRAVVESQRQ RSMRYVNMSN 120 QEPTQMNHLQ QQLPDQAQSL APLPNSLTVY QYPNMDDMYS SFLGGQETGR NEFLSTNMIP 180 YNSFNSNCVN MFQNQFNQNC SKVEDYSGFP QGTGINNMNV EDYSGALWAQ GTNGLQNMDM 240 YGYNNNSNTN GFSHQLVQFP AQRAAPACQY VDGSTQNIRP QFQYSSFVG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00101318001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013689652.1 | 0.0 | agamous-like MADS-box protein AGL103 | ||||
Swissprot | Q9LSB2 | 6e-43 | AG103_ARATH; Agamous-like MADS-box protein AGL103 | ||||
TrEMBL | A0A3N6RXJ5 | 0.0 | A0A3N6RXJ5_BRACR; Uncharacterized protein | ||||
STRING | Bra037571.1-P | 1e-174 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 5e-41 | AGAMOUS-like 103 |
Publications ? help Back to Top | |||
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