PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101318001
Common NameGSBRNA2T00101318001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 290aa    MW: 32744.7 Da    PI: 7.7552
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101318001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.45.9e-212368651
                         HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +s +  +++kR+ +++KKAeELS+LC++ev+vi ++s+g+l+++++
  GSBRNA2T00101318001 23 SSLKAASLAKRQVTVFKKAEELSILCGVEVCVICYGSDGELRTWPK 68
                         677889**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-4469IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-152486IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.6762670IPR002100Transcription factor, MADS-box
CDDcd002661.01E-162692No hitNo description
PfamPF003191.6E-132866IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-53247IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-54768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSSSLSKTTK VSQFRPTLFQ KASSLKAASL AKRQVTVFKK AEELSILCGV EVCVICYGSD  60
GELRTWPKDR EKVKDMALRY SQLSELIQSL ERKETIMQDR LRAVVESQRQ RSMRYVNMSN  120
QEPTQMNHLQ QQLPDQAQSL APLPNSLTVY QYPNMDDMYS SFLGGQETGR NEFLSTNMIP  180
YNSFNSNCVN MFQNQFNQNC SKVEDYSGFP QGTGINNMNV EDYSGALWAQ GTNGLQNMDM  240
YGYNNNSNTN GFSHQLVQFP AQRAAPACQY VDGSTQNIRP QFQYSSFVG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101318001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013689652.10.0agamous-like MADS-box protein AGL103
SwissprotQ9LSB26e-43AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A3N6RXJ50.0A0A3N6RXJ5_BRACR; Uncharacterized protein
STRINGBra037571.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.15e-41AGAMOUS-like 103
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]