PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00100639001
Common NameGSBRNA2T00100639001, LOC106415440
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 289aa    MW: 32235 Da    PI: 8.9527
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00100639001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.21.5e-20214248135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  GSBRNA2T00100639001 214 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 248
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.14E-15207270No hitNo description
SMARTSM004013.8E-20208258IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.084212244IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-15212245IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.56E-17213270No hitNo description
PfamPF003202.4E-18214248IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MNWLPEGEFK GLSDNFFDDF INHIDFPLED IDTTNGEGGD WDAKFKELEP PPMDMFTTFP  60
SEFNSCGVAS KAGIKKNVSV LKQSDASAAL SGINDTLHQS SSHHDVKVSK LFQSSSPVSV  120
LESSDGSFSP PNSTSLRLTF PVKGLRSKRK RPTTLRRRHL YPFEPEKLTP GESESETYYS  180
YEKHAKKKRK IFTTNHTVSS SSEAIDSDGV VRRCTHCETT KTPQWREGPN GPKTLCNACG  240
VRFRSGRLVP EYRPASSPTF VPSVHSNSHR KIIEMRSREG DQFGKRAV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00100639001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895186e-75AC189518.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB090M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711604.10.0GATA transcription factor 11 isoform X1
SwissprotQ6DBP81e-137GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A3P6EC500.0A0A3P6EC50_BRAOL; Uncharacterized protein
STRINGBo5g008670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-114GATA transcription factor 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]