PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00100440001
Common NameGSBRNA2T00100440001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 567aa    MW: 59490.9 Da    PI: 10.0591
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00100440001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.6e-11198242144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                          r++W++eEd  l+ avk++G g+W+ Iar     +Rt+ q+  rw
  GSBRNA2T00100440001 198 RQKWSAEEDADLIAAVKRFGEGNWAHIARGEFrGRRTASQLSQRW 242
                          89**************************96555799**9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-14191247IPR009057Homeodomain-like
PROSITE profilePS5129414.844193250IPR017930Myb domain
SuperFamilySSF466892.37E-12195248IPR009057Homeodomain-like
SMARTSM007172.8E-8197248IPR001005SANT/Myb domain
PfamPF002491.7E-8198242IPR001005SANT/Myb domain
CDDcd116603.09E-13199247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MVDSSNKRRK RTISEGDIAT LLQSRYDAET ILRLLQEMAF YSDVKKMDWN ELVKKTTTGI  60
TNAREFQMLW RHLSYRDPLL PLVEDDAQPL DDDSDVECEL EASPAVSVEA SVEAVAHVKV  120
IAASYVPRES DILHESTSEA PLTINIPYAL PEGTQESPWS SRGMNITFPV CLQKATSTEG  180
INGNVSASTS MASQRKTRQK WSAEEDADLI AAVKRFGEGN WAHIARGEFR GRRTASQLSQ  240
RWPHLRRRYD TSTSASQSQI AVNHALSLAL GNRPPSKKVA VGTQGSGGRP SQGQQQSKPV  300
AVQTLSRAAT TVSASKSRVV NKTTARSTSR SDLMVTANSA AAAACIGGVM AAASAPKVES  360
VKNAPTASMP RPPGSLVEPG KTVSPFSITK AVGPANTPPL ANGNLKSVTP SPSSIKSPLM  420
GSPSEGSTAS KIVSNQGVFS ASVPATVLPP KPTAETVICK PDGGHKEQAR GDGASSVVAI  480
QSNKMTSTNS EISRGKQAAT HAQTAVLGAA NQSLVDKTAV PSISGAGSES KSKCEVNNKV  540
GSVVTVSKAC GKPPEVATVR GTGQGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00100440001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697235.10.0uncharacterized protein LOC106401294
TrEMBLA0A3P6ECA20.0A0A3P6ECA2_BRAOL; Uncharacterized protein
STRINGBo5g010120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]