PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00100129001
Common NameGSBRNA2T00100129001, LOC106409236
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 228aa    MW: 25075.1 Da    PI: 7.0906
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00100129001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.72e-2082116135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  GSBRNA2T00100129001  82 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 116
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-1876127IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.91676112IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-1379118No hitNo description
Gene3DG3DSA:3.30.50.102.9E-1780116IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.02E-1481113No hitNo description
PfamPF003204.9E-1882116IPR000679Zinc finger, GATA-type
PROSITE patternPS00344082107IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MMGFSMFFSE NDGVHHSSAY ASVDCTLSLG TPSTRLCNDD DDRRFSSHTS NNMSNALGSW  60
DFLHGGKKGG GGGGNNLLAR RCANCDTTST PLWRNGPRGP KSLCNACGIR FKKEERREST  120
ARNSGRNSTS GGVSTAAAGV PVSDHHGVTN YYYNNNNNNN NHYDSSSPWI HHQHQNTQRV  180
PYYSPANNEY SFVDDVRDDN NDLTSDPFLS WRLNVADRAS LVHDFPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472GGKKGGGGG
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout the inflorescence meristem (IM) and early stages of floral primordia. In developping flowers, restricted to the innert hree whorls, speci fi cally in the petals, stamens, and carpels. Within the stamens, mostly detected in the anther locules as well as in the vascular strands. In carpels, mainly present in ovules. {ECO:0000269|PubMed:23335616}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00100129001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893732e-86AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705350.11e-169GATA transcription factor 19
SwissprotQ6QPM22e-95GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A0D3DI051e-167A0A0D3DI05_BRAOL; Uncharacterized protein
STRINGBo7g118030.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.13e-97GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]