PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099898001
Common NameGSBRNA2T00099898001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 242aa    MW: 27893.2 Da    PI: 9.9752
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099898001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.8e-141863147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g W + Ed++l+++v+q+G+ +W+ I + +  gRt+ +c+ rw + 
  GSBRNA2T00099898001 18 KGLWKPFEDDKLKQLVEQYGPQNWNIIGELFS-GRTGQSCRQRWCNQ 63
                         5779****************************.***********985 PP
2Myb_DNA-binding59.66.7e-1970113146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T+eE+e+l++a++ +G++ W+ Ia+ ++ gRt++ +k++++ 
  GSBRNA2T00099898001  70 KGPFTKEEEERLLEAHRIHGNR-WAYIAKLFP-GRTDNALKNHYHV 113
                          79********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3611364IPR017930Myb domain
SuperFamilySSF466895.62E-2915111IPR009057Homeodomain-like
SMARTSM007172.1E-111766IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-241971IPR009057Homeodomain-like
CDDcd001672.13E-102162No hitNo description
PfamPF139211.1E-172181No hitNo description
PROSITE profilePS5129426.03865119IPR017930Myb domain
SMARTSM007179.7E-1669117IPR001005SANT/Myb domain
CDDcd001671.06E-1172112No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2272118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSRGSNSCDN KKTKGHRKGL WKPFEDDKLK QLVEQYGPQN WNIIGELFSG RTGQSCRQRW  60
CNQLAPNINK GPFTKEEEER LLEAHRIHGN RWAYIAKLFP GRTDNALKNH YHVTMKRRKR  120
IGLSSTPTSP FNQIRSPIFP LPRQSDYLYP FQRYQMHNIR GPWPNTSASA PRSDQFGSSW  180
ISNAQQETDL YWRKSNQMLD HQAATPDHEK NSSGEDGTSM IDHGEKRDVP FFDFLGVGLD  240
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32181187107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099898001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022561592.10.0transcription factor MYB105
TrEMBLA0A0D3DHG81e-178A0A0D3DHG8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EXP31e-178A0A3P6EXP3_BRAOL; Uncharacterized protein
STRINGBo7g116160.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-91myb domain protein 69
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]