PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099890001
Common NameGSBRNA2T00099890001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 990aa    MW: 110827 Da    PI: 8.6653
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099890001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.5e-163364161398
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +++l +pkkf + ++ k   +k +tl+++sg +++v l  +  +++   ++ GW +Fvk++ L e D +vFk++g+sef   v +f+
  GSBRNA2T00099890001 336 HNLLAIPKKFSTYCKRK--LPKIVTLKSPSGAKYNVGL--EEDDEKtLAFRCGWDKFVKDHSLHESDLLVFKFNGSSEF--EVLIFD 416
                          6889******9766755..8899***************..777766699***********************9998888..888876 PP
2B354.81.7e-17534631199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                          f+ v+++s+v +++ l++p +  +++++ +++  ++++ +    +W++k+++ +++gr   + GWk+Fv++n+L+egD++vF+ +  + +
  GSBRNA2T00099890001 534 FLVVMKRSHVVSKCFLYVPVQWSARNMSREPQ--DVVM-QVGETKWQLKFKHYGSKGRGGVSVGWKKFVRDNNLCEGDVCVFEPTkPEaK 620
                          78899*********************988655..5665.557889999999888888888899********************6634468 PP

                          EE..EEEEE-S CS
                   B3  89 efelvvkvfrk 99 
                           f+l v +fr+
  GSBRNA2T00099890001 621 PFHLDVYIFRA 631
                          88888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF042783.8E-4210146IPR007378Tic22-like
PfamPF042788.8E-58179299IPR007378Tic22-like
SuperFamilySSF1019363.34E-19323417IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.507324418IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-19325416IPR015300DNA-binding pseudobarrel domain
CDDcd100174.85E-16326416No hitNo description
SMARTSM010195.8E-18327418IPR003340B3 DNA binding domain
PfamPF023624.1E-13336416IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-18533631IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-17534631IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.8E-19534632IPR003340B3 DNA binding domain
PfamPF023622.1E-15534631IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056534632IPR003340B3 DNA binding domain
CDDcd100171.71E-20534630No hitNo description
SuperFamilySSF509782.01E-32778962IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.6E-19794881IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029417.904795971IPR017986WD40-repeat-containing domain
SMARTSM003203.5E-4805844IPR001680WD40 repeat
PfamPF128941.0E-4811859IPR024977Anaphase-promoting complex subunit 4, WD40 domain
PROSITE profilePS5008211.879812853IPR001680WD40 repeat
SMARTSM003203.2E-4858911IPR001680WD40 repeat
PfamPF004002.2E-4862911IPR001680WD40 repeat
PROSITE profilePS500828.637865895IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.2E-15882968IPR015943WD40/YVTN repeat-like-containing domain
PROSITE patternPS006780898912IPR019775WD40 repeat, conserved site
SMARTSM003205.6E-7923962IPR001680WD40 repeat
PfamPF004000.002925962IPR001680WD40 repeat
PROSITE profilePS5008212.58930963IPR001680WD40 repeat
PROSITE patternPS006780949963IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MEPSLKPNPF LSFSSFLHTH CNRFASDLSA RFEDTKRFAE SLTTRRFSPP PFASVSQSPK  60
PSSAGTSTAT LNPSHVAKAL AGTSVFTVSN TNNEFVLISD PTGEKSIGLL CFRQEDAEAF  120
LAQARLRRRE LKANAKVVPI NLDQDYVSVS YEFMCLGVKS QLICSCLAFI NLIYNMLIVY  180
LLKVEGISFR FLPDPIQIKN AMELKSSSSK NGFDGVPVFQ SELLVVRKKN KRYCPVYFSK  240
EDIEKELSKY TRASRADQQI MVGSLEDVLR KMERSEKNSG WEDVIFIPPG RSYAQHMQEE  300
KKMEENCEDC MRWEEQLYWN HFQTVHFSQL LLPGFHNLLA IPKKFSTYCK RKLPKIVTLK  360
SPSGAKYNVG LEEDDEKTLA FRCGWDKFVK DHSLHESDLL VFKFNGSSEF EVLIFDGDTL  420
CEKPTSYFVR KYDLIDIDTM LPQTGIEQEE HSNSDIDTDS GQLPVISPTS KGPISEGKYP  480
IGVFKKMRGQ ISINDLNRKA DVEMIPGGSR RRVGETNKRK ALSLAKRAVS RKGFLVVMKR  540
SHVVSKCFLY VPVQWSARNM SREPQDVVMQ VGETKWQLKF KHYGSKGRGG VSVGWKKFVR  600
DNNLCEGDVC VFEPTKPEAK PFHLDVYIFR AAEAESSNNT TSMNTSTHLK AQARCPLQEH  660
FLPRKNSKEN LDRFIPNRSA MDFDYAHYAL TEGNKGKDQV SSPSREAYRK QLAETMNLNH  720
TRILAFRNKP QAPVDLLPTD HSASLHHQPK SVKPRRYIPQ TSERTLDAPD IVDDFYLNLL  780
DWGSANVLAI ALGHTVYLWD ASTGSTSELV TIDEEKGPVT SINWAPDGRH VAVGLNNSEV  840
QLWDSGSNRQ LRTLKGCHQS RVGSLAGHTQ EVCGLKWSGS GQQLASGGND NVANLLATGG  900
GGGDRTIKFW NTHTGACLNS VDTGSQMAEL TGHTSRVLYM AQSPDGCTVA SAAGDETLRF  960
WNVFGVPETA KKAAPKAVHE PFSHVNRIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ggd_A7e-646679774418Cell division cycle protein 20 homolog
4ggd_B7e-646679774418Cell division cycle protein 20 homolog
5g04_R4e-6366797772486CELL DIVISION CYCLE PROTEIN 20 HOMOLOG
5khr_R4e-6366797772486Cell division cycle protein 20 homolog
5khu_R4e-6366797772486Cell division cycle protein 20 homolog
5khu_S4e-6366797772486Cell division cycle protein 20 homolog
5lcw_R4e-6366797772486Cell division cycle protein 20 homolog
6f0x_Q4e-6366797772486Cell division cycle protein 20 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.23460.0flower| leaf| microspore| microspore-derived embryo| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099890001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2240780.0AJ224078.1 Brassica napus mRNA with similarity to p55cdc and fizzy genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3P6E9960.0A0A3P6E996_BRAOL; Uncharacterized protein
STRINGBo7g116090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM905223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-165B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]