PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099870001
Common NameGSBRNA2T00099870001, LOC106409276
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 315aa    MW: 34736.4 Da    PI: 4.6605
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099870001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.5e-18205239135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  GSBRNA2T00099870001 205 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 239
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.0E-1011295IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.438199235IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-17199249IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-15202263No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14203237IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.65E-15204251No hitNo description
PROSITE patternPS003440205230IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15205239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEQQLTPELL LVAGNADSFV VDDLLDFSND NGQPDDGFES FPDSSAVSVG NLASSSNSSS  60
LYTDGSAFSD DLCVPCEDLA ELEWLSNFVE ESFSKEDQDK LQLLSGLTKT QTTGLTQTHQ  120
TKPEPEPELD QIFILTDTDD SNVSFPAKAR SKRSRSAAST WASRLLAIAA SDEPFPKKKQ  180
LRVKDHDIAG ETDGEGGETG GERRCLHCAT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV  240
PEYRPASSPT FVMARHSNSH RKVMELRRQK EVRDEHLLSQ LRCENLLMDV RSNGDDFLIG  300
NDNNHVAPDF RHLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099870001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895650.0AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705386.10.0GATA transcription factor 9
SwissprotO826321e-173GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A0D3DHE10.0A0A0D3DHE1_BRAOL; GATA transcription factor
TrEMBLA0A3P6E9790.0A0A3P6E979_BRAOL; GATA transcription factor
STRINGBo7g115890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-129GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]