PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099807001
Common NameGSBRNA2T00099807001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 405aa    MW: 46254.9 Da    PI: 8.3211
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099807001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.43.5e-201797494
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3  4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                          l   +++ks+ l +p kf++ h +g k+e+kt+tl++  s ++W+v++  ++++    lt+GWkeFv+a+ L++gDfvvF+l++++ f  +
  GSBRNA2T00099807001 17 PL--LSHSKSH-LNIPAKFFSGHiEG-KQEGKTVTLRSdASEKTWKVEM--KGQR----LTQGWKEFVEAHALRVGDFVVFRLERDMLF--N 96
                         55..4556666.99*********744.457889***997889*******..7777....************************998888..4 PP

                         E CS
                   B3 94 v 94
                         v
  GSBRNA2T00099807001 97 V 97
                         4 PP
2B342.21.5e-132173041398
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          ++ l lp +f++ +g++k++  ++++ d++g +W ++l++ k+  +     ++ ++GW+ F++ n++++g++++++l++  ++++++k++
  GSBRNA2T00099807001 217 RSSLHLPANFTRGNGLIKPG--KIIMVDKKGDEWVMELKVGKTNVSimymyIMSRNGWRIFCDVNEVRAGESLTLELIR-GGESPMLKFC 303
                          46689************777..7***************88444444546655566**********************98.7777899999 PP

                          - CS
                   B3  98 r 98 
                          +
  GSBRNA2T00099807001 304 S 304
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-247104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-219109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.11311103IPR003340B3 DNA binding domain
CDDcd100171.99E-181298No hitNo description
SMARTSM010192.8E-2514103IPR003340B3 DNA binding domain
PfamPF023625.2E-152095IPR003340B3 DNA binding domain
SMARTSM010196.9E-16205306IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547205305IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-14211307IPR015300DNA-binding pseudobarrel domain
CDDcd100175.30E-13212304No hitNo description
Gene3DG3DSA:2.40.330.107.7E-13217305IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-12218304IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MVNASLLSPA TPHFFQPLLS HSKSHLNIPA KFFSGHIEGK QEGKTVTLRS DASEKTWKVE  60
MKGQRLTQGW KEFVEAHALR VGDFVVFRLE RDMLFNVTAL GSSYCEIRYT PSGSRRQEEE  120
EESVGTEKEV EKNLTRFVTL TPTSSSFETG KQFGKDLYIF FTNLEDYIYL IFSKILGAIL  180
LAGLYWLHCI CKLRCSFFLI SIRFFHKLFN FVINSCRSSL HLPANFTRGN GLIKPGKIIM  240
VDKKGDEWVM ELKVGKTNVS IMYMYIMSRN GWRIFCDVNE VRAGESLTLE LIRGGESPML  300
KFCSEMEQAP FEAEACAHKR AKWSQEIREK TTEEGEPSHR ARASNKTNAN QENLQNKQPC  360
SVSDLLTEVK HSVTKEQELE DSLQEINNLE RKIQRNKTTS SSNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099807001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022572736.11e-144B3 domain-containing protein REM5-like
SwissprotQ8H2D13e-98REM8_ARATH; B3 domain-containing protein REM8
TrEMBLA0A3P6ELW00.0A0A3P6ELW0_BRAOL; Uncharacterized protein
STRINGBra023990.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2333634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.15e-91B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]