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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00099388001 | ||||||||
Common Name | GSBRNA2T00099388001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 298aa MW: 32612.1 Da PI: 8.3155 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.4 | 1.5e-32 | 64 | 118 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY+eClkNhAas+Gg ++DGCgEfmps geegt +al+CaAC+CHRnFHR+e++ GSBRNA2T00099388001 64 TVRYRECLKNHAASVGGSVYDGCGEFMPS-GEEGTLEALRCAACDCHRNFHRKEND 118 79**************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-25 | 64 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.1E-30 | 65 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-30 | 66 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.838 | 67 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-31 | 219 | 289 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.09E-18 | 220 | 289 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.0E-30 | 229 | 285 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDMRSHEMIE RRRDDNGNNG VGNINSIITN EDNCNGNNNT RVSSNSQTLV PHQSKSSPSF 60 SISTVRYREC LKNHAASVGG SVYDGCGEFM PSGEEGTLEA LRCAACDCHR NFHRKENDGV 120 GSSDGSSHHR HHHHHHQYGG GRRPPPGNMM LNPLMLPPPP SYAPLHHHKY GMSPPGGGGM 180 VTPMSFPYGG GGGGGGGAES SSEDLNMYGQ SSGEHGGGVT PGQTEFSMKR FRTKFTAEQK 240 EKMMEFAEKL GWRMNKQDEE ELKRFCGEIG VKRQVFKVWM HNNKNNARKP PTPTTTT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-24 | 227 | 287 | 16 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6506 | 1e-55 | leaf| microspore| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00099388001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353274 | 1e-165 | AK353274.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-B06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104712.1 | 1e-152 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Refseq | XP_013648911.1 | 1e-152 | zinc-finger homeodomain protein 5-like | ||||
Refseq | XP_018508341.1 | 1e-152 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Refseq | XP_022544710.1 | 1e-152 | zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9FRL5 | 1e-114 | ZHD5_ARATH; Zinc-finger homeodomain protein 5 | ||||
TrEMBL | A0A3P6BVZ4 | 0.0 | A0A3P6BVZ4_BRACM; Uncharacterized protein | ||||
STRING | Bra003759.1-P | 1e-151 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7279 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 1e-103 | homeobox protein 33 |
Publications ? help Back to Top | |||
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