PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099033001
Common NameGSBRNA2T00099033001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 296aa    MW: 33595.4 Da    PI: 9.2186
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099033001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091527123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC  C++sF +   L  H+r+H
  GSBRNA2T00099033001  5 YKCRFCSQSFFNGRALGGHMRSH 27
                         9********************99 PP
2zf-C2H215.45.3e-05187209123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cgk+F++   L  H  +H
  GSBRNA2T00099033001 187 FTCETCGKVFKSYQALGGHRASH 209
                          89***********9999998887 PP
3zf-C2H211.20.0011232254123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kCp+C ++F +   L  H r+H
  GSBRNA2T00099033001 232 HKCPICLRVFASGQALGGHKRSH 254
                          79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-4429IPR007087Zinc finger, C2H2
SuperFamilySSF576674.54E-9427No hitNo description
PROSITE profilePS501579.951527IPR007087Zinc finger, C2H2
SMARTSM003550.017527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576674.54E-9182209No hitNo description
SMARTSM003550.02187209IPR015880Zinc finger, C2H2-like
PfamPF139124.7E-11187211IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.053187214IPR007087Zinc finger, C2H2
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SMARTSM003550.11232254IPR015880Zinc finger, C2H2-like
PfamPF139129.9E-12232254IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078232254IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MESYYKCRFC SQSFFNGRAL GGHMRSHMPS LHKFSIQEEE RASQLNDETE SDVSSSSSER  60
EEGKRNGLRD NKHPIMEDNE SETESSRNVT NPTRKRSKRT RKVETFATKK RKTSQLGYKT  120
EPECEPPQSS ASDTTTEEDL AFCLMLLSRD KWKKKKKNKA SSNKEVVEEI ETEASEGYNK  180
SSKKGRFTCE TCGKVFKSYQ ALGGHRASHK KNRVSNKTEQ RSETEYPEKT IHKCPICLRV  240
FASGQALGGH KRSHGIGNLS VDHHHQVRVD SVKQRTIDLN LPAPTDEEEV SVVFQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193111RKRSKRTRKVETFATKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099033001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651976.10.0zinc finger protein ZAT9-like
RefseqXP_013652034.10.0zinc finger protein ZAT9-like
SwissprotQ9M2021e-125ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A3P6B9A40.0A0A3P6B9A4_BRACM; Uncharacterized protein
STRINGBra003422.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-111C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]