PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00098943001

Common Name

GSBRNA2T00098943001, LOC106353182

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 317aa MW: 35734.1 Da PI: 9.8943

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00098943001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.9	3.1e-14	27	122	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsessst 78 W+++ + +Li+a ++ +l+rg l++++W+ev++++ ++ + r+ +qCk++++ l+k+yk +k++ +++ +s GSBRNA2T00098943001 27 WSEEATFTLIQAWGRRYVDLSRGGLRQKHWQEVANAVndrhfntgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSSE--SYVSA 114 **********************************************997777789********************95..56669 PP trihelix 79 cpyfdqle 86 +p+f++l+ GSBRNA2T00098943001 115 WPFFSDLD 122 ****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.6E-24	25	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MKDAVNDSFS PGSSRPSPSM LSREDYWSEE ATFTLIQAWG RRYVDLSRGG LRQKHWQEVA 60 NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSSES YVSAWPFFSD 120 LDELLRETFP ATSSAGPDNS QRPSPSLPIV PVPVAPRSAI SRRPAIMSLG GDNLLGFRGN 180 LNAFAAAAAA AASPAYEDDS NGSRSRSSGG NNRKRERERE VEIEIEEKKG YKEVAEAIER 240 FGKIYEKVEE RKRKEMVELE KQRMRFAKEL ECHRMQLFTE MQVRLHKLRR SSGSNGPTSS 300 ANAALEYGMM DFPSYF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14012	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00098943001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189221	1e-116	AC189221.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013648343.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A3P6BFX2	0.0	A0A3P6BFX2_BRACM; Uncharacterized protein
STRING	Bo6g075950.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9635	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-121	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	106353182

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]