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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00098309001 |
Common Name | GSBRNA2T00098309001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
CO-like |
Protein Properties |
Length: 378aa MW: 42458.6 Da PI: 6.0657 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00098309001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 26.9 | 9.9e-09 | 13 | 57 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
+r C+ + + +++++C ++ +lC++C + H+ H++v
GSBRNA2T00098309001 13 ARACDSCVKRRARWYCAADDAFLCQSCDTLVHSAnllarrHERVL 57
578*****************************6688888898875 PP
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2 | CCT | 68.3 | 2.1e-23 | 319 | 362 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
GSBRNA2T00098309001 319 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 362
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 378 aa
Download sequence Send
to blast |
MKSLASAVGA KTARACDSCV KRRARWYCAA DDAFLCQSCD TLVHSANLLA RRHERVLLKS 60 ASKHSNHNHN HSPSSPPHEA ATWHHGFTRK PRTPRGSGKK NNLSIFHDLV PEISVEDQTE 120 SCELEEQLIC QVPVLDPTVA EQILNDVVEA KIEFPIMRSG VMMDDQEDED NAESCLNGFF 180 PTDMELEEYA ADVETLLDMN IGICDDDRDA TAPFELSFDY ESHNTYEEEV IKNIEGSGEC 240 VKVKEEEQKN VLMLRLNYDS VISTWGGQGP PWTSGEPPER DIDISSWPFV SMGGNVRESQ 300 QKHHVGVCLP SSGFGDGGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK 360 RASLAVSAMN SPLGVNY*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 329 | 345 | RRTRLFSKKIRYEVRKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189476 | 0.0 | AC189476.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB080N15, complete sequence. |