PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098275001
Common NameGSBRNA2T00098275001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 394aa    MW: 44233.9 Da    PI: 6.2923
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098275001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.7e-083323652154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++ +L +++gL+ +q+ +WF N+R +
  GSBRNA2T00098275001 332 KWPYPTEEDKVRLVQETGLELKQINNWFINQRKR 365
                          469*****************************87 PP
2ELK28.92.5e-10286307122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++++++++E++
  GSBRNA2T00098275001 286 ELKHELKQGYKEKIVDIREEIL 307
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.6E-19120164IPR005540KNOX1
PfamPF037906.5E-17123163IPR005540KNOX1
SMARTSM012569.3E-28176232IPR005541KNOX2
PfamPF037914.7E-20182231IPR005541KNOX2
PfamPF037899.0E-7286307IPR005539ELK domain
SMARTSM011886.1E-4286307IPR005539ELK domain
PROSITE profilePS512139.969286306IPR005539ELK domain
PROSITE profilePS5007111.677306369IPR001356Homeobox domain
SMARTSM003894.5E-11308373IPR001356Homeobox domain
SuperFamilySSF466893.72E-16308372IPR009057Homeodomain-like
CDDcd000868.29E-11309370No hitNo description
Gene3DG3DSA:1.10.10.602.7E-25313370IPR009057Homeodomain-like
PfamPF059202.1E-17326365IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAFHNNHFNH FIDQQHQPPP PSQQQQEHHF HESTPPNWLL RSDNNFLNLQ TAASAAATSS  60
DSPSSAAANQ WLSRSTSFLQ RGGGANNNNV GSGDVIDDFT TGGEESMIGE GKEAERWQNA  120
RHKSEILSHP LYERLLSAHV ACLRIATPVD QLPRIDAQLA QSQNVVAKYS TMDAAAQGLI  180
SGDEKELDHF MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG  240
ATMSEDEDEQ VESDAHLHDG SLDGLGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV  300
DIREEILRKR RAGKLPGDTT SVLKAWWQSH SKWPYPTEED KVRLVQETGL ELKQINNWFI  360
NQRKRNWHSN PSSSTVPKNK RRSNAGENSG RER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12309373872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098275001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533380.0AK353338.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614952.10.0PREDICTED: homeobox protein knotted-1-like 4 isoform X1
SwissprotP480010.0KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A078INZ30.0A0A078INZ3_BRANA; BnaCnng20070D protein
STRINGBo2g010190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.10.0KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]