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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00098193001 | ||||||||
Common Name | GSBRNA2T00098193001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 103aa MW: 12004.7 Da PI: 6.8281 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.9 | 2.6e-11 | 10 | 96 | 4 | 89 |
E-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 vlt d +++g+l+lp + +e++ + ++++ ++ + d + +s+ v+l +k++ +y++++GWk+ ++ +Lk+gD++ ++ ++ ++ GSBRNA2T00098193001 10 VLTDTDLSTQGWLILPTQKIENIeknlgfTL-PRNGAQVEILD-NDKSYWVNL--NKNKAGYYIGQGWKSLRDERDLKTGDVIQLYWKD-TK 96 688899999***********88887787533.34666788888.557777***..****************************999543.43 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.5E-13 | 5 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-14 | 6 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.107 | 7 | 102 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-8 | 7 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.36E-10 | 8 | 100 | No hit | No description |
Pfam | PF02362 | 1.8E-9 | 10 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MDPDMMTKRV LTDTDLSTQG WLILPTQKIE NIEKNLGFTL PRNGAQVEIL DNDKSYWVNL 60 NKNKAGYYIG QGWKSLRDER DLKTGDVIQL YWKDTKFIFS MW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00098193001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628005.1 | 1e-69 | PREDICTED: B3 domain-containing protein At1g08985 | ||||
Swissprot | Q8GWU1 | 1e-39 | Y1898_ARATH; B3 domain-containing protein At1g08985 | ||||
TrEMBL | A0A078JS02 | 3e-68 | A0A078JS02_BRANA; BnaCnng67860D protein | ||||
TrEMBL | A0A0D3BE61 | 3e-68 | A0A0D3BE61_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6B120 | 3e-68 | A0A3P6B120_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g092070.1 | 5e-69 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14170 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 5e-42 | B3 family protein |
Publications ? help Back to Top | |||
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