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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00098053001 |
Common Name | GSBRNA2T00098053001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MIKC_MADS |
Protein Properties |
Length: 232aa MW: 27090.7 Da PI: 10.836 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00098053001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89.6 | 1.6e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
k+ien++ rqvtfskRr+g++KKA+ELSvLCda+va iifs++g+ly++
GSBRNA2T00098053001 9 KKIENTTSRQVTFSKRRKGLFKKAHELSVLCDAQVAAIIFSQKGRLYDFT 58
68**********************************************97 PP
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2 | K-box | 62.4 | 1.7e-21 | 85 | 168 | 11 | 94 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94
e+ + l++e+a + ++ie+L+ +R+l+G++L s+s+keLq++ +q++ksl +R +K +l+ ++ie+l+ ke+el++e +L
GSBRNA2T00098053001 85 EQYVQGLKKEMATMVEKIEMLEVHNRKLMGQNLASCSVKELQEIATQIKKSLHIVRLRKAKLYGDEIEKLKAKERELKDERVRL 168
6778999***************999*****************************************************998776 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MVRGKIQIKK IENTTSRQVT FSKRRKGLFK KAHELSVLCD AQVAAIIFSQ KGRLYDFTSS 60 DIQKTIKRYA EYKREYFVAE SHPMEQYVQG LKKEMATMVE KIEMLEVHNR KLMGQNLASC 120 SVKELQEIAT QIKKSLHIVR LRKAKLYGDE IEKLKAKERE LKDERVRLCE RGSWLFLGCL 180 RRAPRLSSGG RSLGASRVSF EDIGISRLEK DHWGRHQAAK RKRMWKLTYR R*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY141221 | 1e-158 | AY141221.1 Arabidopsis thaliana MADS-box protein AGL72 mRNA, complete cds. |
GenBank | DQ447061 | 1e-158 | DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds. |
GenBank | DQ653360 | 1e-158 | DQ653360.1 Arabidopsis thaliana clone 0000017130_0000012002 unknown mRNA. |