PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097844001
Common NameGSBRNA2T00097844001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 374aa    MW: 41669.7 Da    PI: 4.6315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097844001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022184206123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC  Cgk F++   L  H  +H
  GSBRNA2T00097844001 184 YKCDVCGKEFTSYQALGGHKASH 206
                          9***********99999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-8183259No hitNo description
PROSITE profilePS5015710.658184206IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-4184206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0059184206IPR015880Zinc finger, C2H2-like
PfamPF139128.5E-13184207IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
SMARTSM003550.086237259IPR015880Zinc finger, C2H2-like
PfamPF139124.6E-12237261IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDLLLFEALM QLPPSTRDTV VKVLDHASQN HPTDHDEDYP KRICLREEEE CATGTVCVEP  60
RLQSSDSEEY SSSRSSKTVT QEECGQCSMD DDDDETTSPS SSETVEQRMI LYKPQQEEYE  120
EDDVVSTELT LGSSSAQPSR QQEEPSSSSP SEDDTSALLL VELCRIRPMQ LQTQTQTPHK  180
FDSYKCDVCG KEFTSYQALG GHKASHRVKL QQPLVENANA EAGGKTRPRM APSGKIHKCS  240
ICNVEFPTGQ ALGGHKRRHY EGVLSGNKRS HDEVIAGDRS SSPNHESDVT NMSGRKQSFV  300
GDHKRSHDEV IAGDKSSPKH ESDVTKNPGR SFIRLFDLNE FPLQEFDDNN MQEVDEYESA  360
IVANKTLQLI DLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097844001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018508001.10.0PREDICTED: zinc finger protein AZF1
TrEMBLA0A078ILT10.0A0A078ILT1_BRANA; BnaA06g37620D protein
STRINGBra018817.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-26zinc-finger protein 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]