PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00097409001

Common Name

GSBRNA2T00097409001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 272aa MW: 31360.4 Da PI: 8.9578

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00097409001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.1	2.6e-35	85	140	2	57
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrk 57 ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt GG++r vPvG+g+ k GSBRNA2T00097409001 85 PDKILPCPRCKSSDTKFCYYNNYNVTQPRHFCRSCQRYWTSGGSMRTVPVGSGQNK 140 7899*************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-26	81	140	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-29	87	140	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.804	89	143	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	91	127	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MPRGCICICI VVLKEIREPN PKTRSDKNEF EPIQTWHKYR MNLVLWYFGQ HKSEGSKETS 60 ENSEITTTTT TTASEEKTTD DLKKPDKILP CPRCKSSDTK FCYYNNYNVT QPRHFCRSCQ 120 RYWTSGGSMR TVPVGSGQNK GWVSSDHYMH IKSENTNNYN DASAKILSFD SSGDESLVTE 180 NGKNQSSDSI SKNFNNFQRF LPPQVTSSVS RPWPYQYPHI PTFYHIPVYW GCTVPFWSTL 240 QTYTCTHISQ HHIMHTHKKK KKTLLCLILG M*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00097409001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022556722.1	1e-107	dof zinc finger protein DOF1.3-like isoform X2
Swissprot	Q9LQX4	4e-87	DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBL	A0A078IMU4	0.0	A0A078IMU4_BRANA; BnaC05g50970D protein
STRING	Bo5g045140.1	1e-138	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14082	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26790.1	3e-81	Dof family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]