PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 62aa MW: 6363.3 Da PI: 4.6362

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00097284001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	66.4	5.8e-21	1	57	319	374
GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++GF pvpl+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+ GSBRNA2T00097284001 1 MGSVGFDPVPLGSSAFKQASMLLSVFAgGDGYRVEENDGCLMLGWQTRPLIATSAWK 57 7899****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.9E-18	1	57	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:1903506	Biological Process	regulation of nucleic acid-templated transcription

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MGSVGFDPVP LGSSAFKQAS MLLSVFAGGD GYRVEENDGC LMLGWQTRPL IATSAWKLAG 60 A*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in both vegetative and reproductive tissues. {ECO:0000269\|PubMed:15347801}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00097284001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130367.1	3e-35	PREDICTED: LOW QUALITY PROTEIN: DELLA protein RGL2
Refseq	XP_013637838.1	3e-35	PREDICTED: DELLA protein RGL2
Refseq	XP_013747675.1	3e-35	DELLA protein RGL2 isoform X3
Refseq	XP_022569045.1	3e-35	DELLA protein RGL2 isoform X1
Refseq	XP_022569046.1	3e-35	DELLA protein RGL2 isoform X2
Swissprot	Q7Y1B6	8e-30	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A078I207	1e-36	A0A078I207_BRANA; BnaA05g32630D protein
TrEMBL	A0A0D3CN13	8e-34	A0A0D3CN13_BRAOL; Uncharacterized protein
TrEMBL	A0A397ZJP9	7e-34	A0A397ZJP9_BRACM; Uncharacterized protein
TrEMBL	A0A3P5ZGI2	7e-34	A0A3P5ZGI2_BRACM; Uncharacterized protein
TrEMBL	A0A3P6FP66	7e-34	A0A3P6FP66_BRAOL; Uncharacterized protein
STRING	Bo5g149920.1	1e-34	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM26445	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	5e-32	RGA-like 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]