PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00097089001

Common Name

GSBRNA2T00097089001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 102aa MW: 11461.3 Da PI: 9.2917

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00097089001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.8e-11	38	83	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ + s ae+L +A e+Ik Lq GSBRNA2T00097089001 38 SIAERDRRTRISGKLKKLQELVPNiD-----NQTSYAEMLDLAAEHIKGLQ 83 689*******************55.....789**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.491	32	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-14	35	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.95E-8	36	87	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-12	37	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-11	38	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-8	38	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MPQTSLEMAR MESLMKIPEG SVPCRVRAKR GCATHPRSIA ERDRRTRISG KLKKLQELVP 60 NIDNQTSYAE MLDLAAEHIK GLQHQVEVHL SIHSIYDIVS N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00097089001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013635790.1	4e-57	PREDICTED: transcription factor bHLH129-like isoform X1
Refseq	XP_013635791.1	4e-57	PREDICTED: transcription factor bHLH129-like isoform X1
Swissprot	Q9ZW81	1e-49	BH129_ARATH; Transcription factor bHLH129
TrEMBL	A0A078JUQ8	1e-68	A0A078JUQ8_BRANA; BnaCnng67160D protein
STRING	Bra037732.1-P	4e-66	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10329	18	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.1	4e-52	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]