PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00096785001 | ||||||||
Common Name | GSBRNA2T00096785001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 21017.8 Da PI: 10.2224 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 1e-05 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H GSBRNA2T00096785001 97 FICEICNKGFQRDQNLQLHKRGH 119 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.54E-5 | 95 | 120 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-6 | 96 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 8.8E-6 | 97 | 119 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.803 | 97 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 139 | 169 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MMMNKDMLYH HQQQQVEENM SNLTSASGDR ASVSSGNRTE TSGSNFHYNT NPNQQQEEQC 60 LAPQPSQKKK RNQPGNPDPE AEVLALSPKT LMATNRFICE ICNKGFQRDQ NLQLHKRGHN 120 LPWKLKQRSN KDVIRKKVYV CPEPNCVHHH PSRALGDLTG IKKHFFRKHG EKKWKCDKCS 180 KK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 136 | KLKQRSNKDVIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00096785001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352994 | 0.0 | AK352994.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-L02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013630324.1 | 1e-133 | PREDICTED: protein indeterminate-domain 7-like | ||||
Refseq | XP_013712246.1 | 1e-133 | protein indeterminate-domain 7-like | ||||
Swissprot | Q8H1F5 | 1e-108 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A078JX02 | 1e-135 | A0A078JX02_BRANA; BnaCnng66930D protein (Fragment) | ||||
TrEMBL | A0A0D3BN38 | 1e-132 | A0A0D3BN38_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g184730.1 | 1e-133 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-102 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
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