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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GSBRNA2T00096513001 | ||||||||
| Common Name | GSBRNA2T00096513001, LOC106446688 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 578aa MW: 63465.1 Da PI: 6.5103 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 86.6 | 2.4e-27 | 191 | 244 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++Wt eLH++Fv av+qL G ekA Pk+il+lm+v+ Lt+e+v+SHLQk+Rl
GSBRNA2T00096513001 191 KPRVVWTVELHKKFVAAVNQL-GFEKAMPKKILDLMNVEKLTRENVASHLQKFRL 244
79*******************.9*******************************8 PP
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| 2 | Response_reg | 84.4 | 3.3e-28 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88
vl vdD+++ +++l+++l + +y +v+++ ++++alell+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++++++ +
GSBRNA2T00096513001 20 VLAVDDDQTCLRILESLLHRCQY-HVTTTNQAQKALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMK 107
799********************.***************888888*******************87754.558***************** PP
HHHTTESEEEESS--HHHHHH CS
Response_reg 89 alkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +eel +
GSBRNA2T00096513001 108 GVTHGACDYLLKPVRIEELKN 128
******************987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 3.8E-171 | 1 | 577 | IPR017053 | Response regulator B-type, plant |
| Gene3D | G3DSA:3.40.50.2300 | 3.0E-43 | 17 | 165 | No hit | No description |
| SuperFamily | SSF52172 | 1.25E-35 | 17 | 138 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 4.6E-33 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 43.285 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 2.0E-25 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 4.25E-28 | 21 | 133 | No hit | No description |
| PROSITE profile | PS51294 | 11.056 | 188 | 247 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.4E-29 | 188 | 249 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.51E-19 | 189 | 248 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.0E-23 | 191 | 244 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.3E-7 | 193 | 242 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 578 aa Download sequence Send to blast |
MTVERQDCVA LDQFPVGMRV LAVDDDQTCL RILESLLHRC QYHVTTTNQA QKALELLREN 60 KNKFDLVISD VDMPDMDGFK LLELVGLEMD LPVIMLSAHS DPKYVMKGVT HGACDYLLKP 120 VRIEELKNIW QHVVRKNRGS NNGDKKDGSG NEGVANSDQN NGRANRKRKD QYNEDEDEER 180 DDNDDPSSQK KPRVVWTVEL HKKFVAAVNQ LGFEKAMPKK ILDLMNVEKL TRENVASHLQ 240 KFRLYLKRIS GNQQAIMANS DLHFLQMSNG LDGFHHRPIP VGSGQFHGGA AAAGMRPFPP 300 NNGILGRLNT PSGIGGVRNL SSPPSSGMFL QNPTDLGKFH HVSSLPLNHI DGGNILQGLP 360 IPLEFDQLQT NNNKSIIAGN SMAFPSFPTS LPNNNNHLVL EGHPQASPSA FPGHQINKRL 420 EHWSNAVSSS SSTLPPPGQN SNSLISHQFD ASSSNYSIPF CDSTIPLNPA LDHTNPRAFY 480 RATDLDSNAN VQPGVYYDSL QMRQSGNYGP TTDAMLSSNP KEGFTVGQQK LQSGFMGGEA 540 GSLDDIVNST MKQEQSQGDL SEGDLGYGGF SSLRTCI* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-27 | 187 | 250 | 1 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Detected immediately after seed germination. {ECO:0000269|PubMed:17363254}. | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in leaves. Expressed at the root transition zone (PubMed:17363254). {ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:17363254}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | GSBRNA2T00096513001 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_013631146.1 | 0.0 | PREDICTED: two-component response regulator ARR12 isoform X1 | ||||
| Refseq | XP_013743914.1 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
| Swissprot | P62598 | 0.0 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
| TrEMBL | A0A078JR86 | 0.0 | A0A078JR86_BRANA; Two-component response regulator | ||||
| TrEMBL | A0A0D3C207 | 0.0 | A0A0D3C207_BRAOL; Two-component response regulator | ||||
| TrEMBL | A0A3P6CXV1 | 0.0 | A0A3P6CXV1_BRAOL; Two-component response regulator | ||||
| STRING | Bo4g157430.1 | 0.0 | (Brassica oleracea) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM1981 | 28 | 79 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G25180.1 | 0.0 | response regulator 12 | ||||
| Link Out ? help Back to Top | |
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| Entrez Gene | 106446688 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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