PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00096399001

Common Name

GSBRNA2T00096399001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 310aa MW: 34173.5 Da PI: 7.292

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00096399001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.3	6.7e-33	158	215	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsY+rCt ++C+vkk+vers+edp++v++tYeg+H h+ GSBRNA2T00096399001 158 EDGYRWRKYGQKAVKNSPFPRSYFRCTNSRCTVKKRVERSSEDPSIVITTYEGQHCHQ 215 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-33	142	215	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-28	149	216	IPR003657	WRKY domain
PROSITE profile	PS50811	29.425	152	217	IPR003657	WRKY domain
SMART	SM00774	1.1E-38	157	216	IPR003657	WRKY domain
Pfam	PF03106	7.3E-26	158	215	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MNDPENPDLT NHDSSWTQLT APDSHFFHRD TSDIFSDFVG NLHASSQSDH HHHPHSLRFG 60 TGLTPTSGVP SSVTTTTLPS TPSSSSSPAA ALSVAVTEVS TSNDLPATSS STEDPTENST 120 ASAAKAPETP KNEKKKAQKR IRQPRFAFMT KSDVDHLEDG YRWRKYGQKA VKNSPFPRSY 180 FRCTNSRCTV KKRVERSSED PSIVITTYEG QHCHQTTGFP RGGILTAHDP SNFTSHHLLP 240 PPLPDPYYYQ ELLYQLHRDN TSTYQKKRDN TSSLRLPQST TEGPAAVSSI NPPEEGLLGD 300 IVPQTMRNT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-25	147	214	7	74	Probable WRKY transcription factor 4
2lex_A	5e-25	147	214	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00096399001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593134	0.0	KM593134.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY14) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127720.1	1e-179	PREDICTED: probable WRKY transcription factor 57
Swissprot	Q9C983	1e-123	WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBL	A0A078IMR2	0.0	A0A078IMR2_BRANA; BnaA02g14710D protein
STRING	Bra038313.1-P	1e-179	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4995	27	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	1e-108	WRKY DNA-binding protein 57

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Jiang Y,Qiu Y,Hu Y,Yu D Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa. Front Plant Sci, 2016. 7: p. 145 [PMID:26904091] Jiang Y,Yu D The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance. Plant Physiol., 2016. 171(4): p. 2771-82 [PMID:27268959] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]