PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096236001
Common NameGSBRNA2T00010887001, GSBRNA2T00096236001, LOC106406046
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 311aa    MW: 35251.9 Da    PI: 9.3456
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096236001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573864.8e-2787175497
               DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                          +rl+se+DeivlLqG+id    +gk+p ++   fy+ +k+s sf+v+ +q+++Kir+++k +++++ +   +++ s+ ++h+qk+f+lsk
  GSBRNA2T00096236001  87 KRLFSEKDEIVLLQGIIDS---KGKNPLKNKRSFYQSMKGSFSFDVTLRQFSDKIRHMQKLYTRNEMR--GEQQASVLNPHQQKCFQLSK 171
                          79****************8...9*******************************************99..99999*************** PP

               DUF573  94 kiWg 97 
                           iWg
  GSBRNA2T00096236001 172 AIWG 175
                          ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.8E-2387175IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MANNLKHPFE DPPSSPSSSA SEDQNLQTIF SSEEDEPEDP PPRSGSKKDV CGSSESQLTG  60
KKRLSSNASS NVAKRICTRG GKMGTDKRLF SEKDEIVLLQ GIIDSKGKNP LKNKRSFYQS  120
MKGSFSFDVT LRQFSDKIRH MQKLYTRNEM RGEQQASVLN PHQQKCFQLS KAIWGADGIA  180
FESAISSNSK SEESERRRVT KKRDFVTSRK GKNVQEAIKR GDMEKSPYVE IESDWDESSF  240
FLGMDFLKEK WTKVPPTETK KKTQEKMKKL HANELECQKF EEMLKVMKDK CAHDKVELLN  300
EVTSLIMAAD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096236001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556779.10.0probable transcription factor At1g66420 isoform X1
TrEMBLA0A078IVX10.0A0A078IVX1_BRANA; BnaC07g47850D protein
STRINGBo4g136340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-27DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]