PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095794001
Common NameGSBRNA2T00095794001, LOC106426741, LOC106439798
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 437aa    MW: 47842.3 Da    PI: 8.2175
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095794001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30103161160
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers   +++v+++Y geH+h+k
  GSBRNA2T00095794001 103 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSP-GGQIVDTVYFGEHDHPK 161
                          58****************************************.***************85 PP
2WRKY106.51.3e-33276334159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d+k++++tYeg+H+h+
  GSBRNA2T00095794001 276 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSRDTKMLIMTYEGNHDHD 334
                          58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.33298162IPR003657WRKY domain
SuperFamilySSF1182908.11E-2599162IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-2699162IPR003657WRKY domain
SMARTSM007741.4E-34103161IPR003657WRKY domain
PfamPF031067.8E-24104160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-34262336IPR003657WRKY domain
SuperFamilySSF1182902.75E-28270336IPR003657WRKY domain
PROSITE profilePS5081134.13271336IPR003657WRKY domain
SMARTSM007741.1E-37276335IPR003657WRKY domain
PfamPF031062.1E-26277333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MSEVGKVLVS DSSSETKKAP DVVVASPDKM EATPVATKTE QCSAEIPEST DSEKLLQLVP  60
ASASEEAAVA SEKAPKIPES GTVLTLQSGS EGSSSPFIRE KVMEDGYNWR KYGQKLVKGN  120
EFVRSYYRCT HPNCKAKKQL ERSPGGQIVD TVYFGEHDHP KPLGGAAAVP MNQDRRSDVL  180
TAVSKEKSSG SSSVQTHQPP KVHGGGLHLS VVPLADDVKT DVSPSSRIKS DITHKDNISP  240
ASKRRKKGGS IEQIPMERPN SESRNVVHTQ TLFDIVNDGY RWRKYGQKSV KGSPYPRSYY  300
RCSSSGCPVK KHVERSSRDT KMLIMTYEGN HDHDMPPGRI VTHNNTLDSE VDDKELSAKD  360
TEVNKTPQSS AVITKEEHHS KKKAKSNGHE KSLDQGPVLD AKPTEEIKDE AAKTKSDYKT  420
MESEEEQKPK AESGQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-45102338176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.168530.0seed| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095794001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931390.0KM593139.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722923.10.0WRKY transcription factor 1-like
RefseqXP_013736767.10.0WRKY transcription factor 1
SwissprotQ9SI370.0WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A078ILZ20.0A0A078ILZ2_BRANA; BnaC03g44980D protein
STRINGBo3g085560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-167zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]