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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00095755001 | ||||||||
Common Name | GSBRNA2T00095755001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 93aa MW: 9710.93 Da PI: 8.2199 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 36.1 | 1.5e-11 | 54 | 88 | 10 | 43 |
ZF-HD_dimer 10 lkNhAaslGghavDGCgEfmpsegee.gtaaalkC 43 l+N Aa++Ggha+D C Efm s++ + +++++lkC GSBRNA2T00095755001 54 LQNRAAAIGGHALDVCSEFMLSPTFTsSDPTSLKC 88 79*********************999899****** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 11.532 | 50 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.8E-7 | 54 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-7 | 54 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MLEVGAMDMT PKYPAKYPTN PKLRPRSNQL NQSPSATESS NAATTSTTTQ PPSLQNRAAA 60 IGGHALDVCS EFMLSPTFTS SDPTSLKCGL PP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00095755001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623869.1 | 3e-56 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Refseq | XP_013624556.1 | 3e-56 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
TrEMBL | A0A078FSQ8 | 7e-60 | A0A078FSQ8_BRANA; BnaC03g65280D protein | ||||
STRING | Bo3g021250.1 | 1e-55 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 2e-11 | homeobox protein 30 |
Publications ? help Back to Top | |||
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