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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00095130001 |
Common Name | GSBRNA2T00095130001, LOC106422529 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
HSF |
Protein Properties |
Length: 331aa MW: 37697.5 Da PI: 8.2628 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00095130001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 114.6 | 6.5e-36 | 35 | 127 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
Fl+k+y+++ed+++++++sw ++ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+k
GSBRNA2T00095130001 35 FLTKTYQLVEDPATDHVVSWGDDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRRGEK 115
9*****************************************************************99.........************* PP
XXXXXXXXXXXX CS
HSF_DNA-bind 92 ellekikrkkse 103
+ll++i+r+k++
GSBRNA2T00095130001 116 HLLCEIHRRKTS 127
*********987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008356 | Biological Process | asymmetric cell division |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MATMLENSYG YDNGGTGERI QLMVEGQGKA VPAPFLTKTY QLVEDPATDH VVSWGDDDTT 60 FIVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF RRGEKHLLCE 120 IHRRKTSQMI PNQHSPFITH HPPPQIPFSG GASFFPLPPR VDAATAAMDD HYWCESPSPR 180 PRLVPTTLDP QVAVLTEDNE RLRRTNTVLM SELAHMKKLY NDIIYFVQNH VKPVAPSNSF 240 LQKQQQPPPL IDYYNNATVP NHSPPTSQSS ITLLEDDTNH ESFTRKTKLF GVSLASSKKR 300 SHHFSDQSSK TRLVLDKSDL GLNLMTASTR *
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |