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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00095023001 |
Common Name | GSBRNA2T00095023001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
HSF |
Protein Properties |
Length: 336aa MW: 38175.1 Da PI: 9.5026 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00095023001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 114.3 | 7.8e-36 | 35 | 127 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
Fl+k+y++++d+++++++sw ++ ++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fk+g+k
GSBRNA2T00095023001 35 FLTKTYQLVDDPATDHVVSWGDDDTTFIVWRPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEK 115
9*****************************************************************99.........************* PP
XXXXXXXXXXXX CS
HSF_DNA-bind 92 ellekikrkkse 103
+ll++i+r+k++
GSBRNA2T00095023001 116 HLLCEIHRRKTS 127
*********987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MAMMVENSYG YGSGGTGERI QLMVEGQGKA VPAPFLTKTY QLVDDPATDH VVSWGDDDTT 60 FIVWRPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE 120 IHRRKTSQMI PNQHSPFITH HPPPQIPFSG GASFFPLPPR VDAAAASMDE RYWCESPPPR 180 PRAIPTTVDA QVTALTEDNE RLRRSNTVLM SELAHMKKLY NDIIYFVQNH VKPVAPSNSY 240 LPSFLQKQQQ PPPPLDYYNN ATVPNHSPPT SQSSISVLEN ETNYKENNTR KTKLFGVSLP 300 STKKRSHHFS HQSSKTRLVL DNSDLGLNLM TASTR*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB493499 | 1e-138 | AB493499.1 Arabidopsis thaliana At1g46264 mRNA for hypothetical protein, partial cds, clone: RAAt1g46264. |