PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00095020001 | ||||||||
Common Name | GSBRNA2T00095020001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 257aa MW: 29143.6 Da PI: 9.7275 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66 | 4.9e-21 | 90 | 149 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ GSBRNA2T00095020001 90 TRWNPTQEQIGILEMLYKGgMRTPNAQQIEHITSQLgkygKIEGKNVFYWFQNHKARERQ 149 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 116.3 | 1.5e-37 | 89 | 151 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+lyk G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq GSBRNA2T00095020001 89 GTRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITSQLGKYGKIEGKNVFYWFQNHKARERQKQ 151 58***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.187 | 85 | 150 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.14E-12 | 86 | 154 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.0E-7 | 87 | 154 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.26E-5 | 90 | 151 | No hit | No description |
Pfam | PF00046 | 1.0E-18 | 90 | 149 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-8 | 91 | 149 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MKVHEFSNGS SSWEQHDSPS SLSLSCKRLR PLAPKLSGSP CSPSSSSGVT SATFDLKSFI 60 KPDQTGPRKF EYSIEHQRDL PQVETHQGGT RWNPTQEQIG ILEMLYKGGM RTPNAQQIEH 120 ITSQLGKYGK IEGKNVFYWF QNHKARERQK QKRNNFISLS CQSSFKTTNI NNASVTTKTT 180 TTSSFDVIRR DSMVEKGELV EETEYKRTCR SWGFENLEID SRRNINSSKN ATMATTFNKI 240 IDNVTLELFP LYPEGR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.24986 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00095020001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013665938.1 | 0.0 | WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7J9 | 1e-134 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A078FVV2 | 0.0 | A0A078FVV2_BRANA; BnaA08g04100D protein | ||||
TrEMBL | A0A397YCT9 | 0.0 | A0A397YCT9_BRACM; Uncharacterized protein | ||||
STRING | Bra014055.1-P | 1e-172 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5980 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 1e-133 | WUSCHEL related homeobox 4 |