PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00094778001 | ||||||||
Common Name | GSBRNA2T00094778001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 277aa MW: 30547.8 Da PI: 6.4417 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.2 | 3.7e-15 | 26 | 86 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ GSBRNA2T00094778001 26 RTRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 86 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.7 | 1.5e-34 | 25 | 88 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +rtRW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q GSBRNA2T00094778001 25 VRTRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 88 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-8 | 5 | 87 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.58E-13 | 21 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.208 | 22 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-5 | 24 | 91 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.6E-13 | 26 | 86 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MDQEGSPQSR QGRSPSATSN STEPVRTRWS PKPEQILILE SIFNSGIVNP PKDETVRIRK 60 MLEKFGAVGD ANVFYWFQNR RSRSRRRQRQ LQAANAAAIA TRGVEDPQHM TTMSMHHPYS 120 NNEIDLGFGS CSNSSANYLF NESSSQVSSF LLGLSSSSTN GGCESNNSMA DLFTMYGHES 180 DHHHFHHPQH SSNDASIPSP SDQNSNIHYQ QGLMTVFING VPTEVTNGAI DMKAMFGEDL 240 VLLHSSGLPL PTDEFGFLIS LQHGQSYFLT FLCSSV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00094778001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013722336.1 | 0.0 | WUSCHEL-related homeobox 12-like | ||||
Swissprot | Q8GY25 | 1e-116 | WOX12_ARATH; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A078FWT7 | 0.0 | A0A078FWT7_BRANA; BnaC09g40100D protein | ||||
TrEMBL | A0A3P6EQU4 | 0.0 | A0A3P6EQU4_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g159820.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2819 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 1e-103 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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